Gene
RNA
| Item | Value |
|---|---|
| gene id | G106385 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000018 |
| NCBI id | null |
| chromosome length | 7078422 |
| location | 6733032 ~ 6736576 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU120916 | False | 1554 | lncRNA | 0.43 | 10 | 6733032 | 6736576 |
| TU120917 | True | 517 | lncRNA | 0.46 | 5 | 6734787 | 6736576 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000018_06654341_06664818 | GABRR3A, GABRR3 | coding | upstream | 68126 | 6654341 ~ 6664906 (+) |
| CI01000018_06624871_06636641 | KIAA1524 | coding | upstream | 96058 | 6624871 ~ 6636974 (+) |
| CI01000018_06609697_06619473 | NA | coding | upstream | 113061 | 6609325 ~ 6619971 (+) |
| CI01000018_06530603_06532567 | AMER2 | coding | upstream | 199957 | 6529471 ~ 6533075 (+) |
| CI01000018_06516545_06524220 | NA | coding | upstream | 207628 | 6516545 ~ 6525404 (+) |
| CI01000018_06774816_06776610 | SMPX | coding | downstream | 38240 | 6772087 ~ 6777049 (+) |
| CI01000018_06780816_06782576 | KLHL34 | coding | downstream | 42823 | 6779399 ~ 6783813 (+) |
| CI01000018_06968918_07004161 | SH3KBP1 | coding | downstream | 232342 | 6968918 ~ 7004379 (+) |
| CI01000018_07011537_07045271 | MAP3K15, MAP3K5 | coding | downstream | 274385 | 7010961 ~ 7045271 (+) |
| CI01000018_07062582_07063654 | NA | coding | downstream | 325882 | 7062458 ~ 7064264 (+) |
| G106383 | NA | non-coding | upstream | 491 | 6732271 ~ 6732541 (+) |
| G106380 | NA | non-coding | upstream | 4844 | 6727912 ~ 6728188 (+) |
| G106376 | NA | non-coding | upstream | 9502 | 6723245 ~ 6723530 (+) |
| G106279 | NA | non-coding | upstream | 90893 | 6640506 ~ 6642139 (+) |
| G106289 | NA | non-coding | upstream | 111587 | 6621169 ~ 6621445 (+) |
| G106387 | NA | non-coding | downstream | 2653 | 6739229 ~ 6741818 (+) |
| G106338 | NA | non-coding | downstream | 19864 | 6756440 ~ 6758884 (+) |
| G106403 | NA | non-coding | downstream | 66499 | 6803075 ~ 6819770 (+) |
| G106445 | NA | non-coding | downstream | 153845 | 6890421 ~ 6892782 (+) |
| CI01000018_05217404_05218896 | NA | other | upstream | 1510416 | 5216452 ~ 5222616 (+) |
| G104670 | NA | other | upstream | 1973264 | 4755801 ~ 4759768 (+) |
| CI01000018_04368179_04375192 | NA | other | upstream | 2359620 | 4368179 ~ 4375866 (+) |
| G104258 | NA | other | upstream | 3041513 | 3691089 ~ 3691519 (+) |
| CI01000018_01924489_01985310 | SEMA5A | other | upstream | 4747721 | 1924489 ~ 1985311 (+) |
| G106429 | NA | other | downstream | 145035 | 6881611 ~ 6886325 (+) |
