G106445


Basic Information

Item Value
gene id G106445
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 6890421 ~ 6892782 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU120988
GGGATCTCCCTCTATTTCTCACAAGAGCTCATCAGCAGGCGGACGCACCACTCCTCTCTCCAGGTACATCCGACGGTTCGGCCAGGAGAGCAGCTTTCGGCTACTGGACCTGCAGATAGTCATTCCAGGGTCTTCGCTGGACTTTATCTTTCGACACAGAAAGGGGGGAAAAGTACCCTGAAAAGTCTTTATTGATAACTACCCCAAAATAATATTCGTTTTTCCTTACTACCTTAGCTGGGAACTTGAATATAGCCATGTCCGAAGTGCTGCCATACAACGAGGGGAAGATGAACGGCTACGGGGCGGACAGTGAAGTTAGTCAGATATCCTTCAGCTGTCGACTGCAAGACACGAACTCGTTCTTCGGAACATCACAGTCCAAAAGACCACCGAAACTCGGGCAGATTGGCAGGGCAAAACATGTGGTCATTGAAGATGACCGAATAGATGAAGTTCTCAAAGGGATGACAGACAAGTCGACTCCCGGCGTGTAAACCTGAACGATTATACCTCGTCAACCTTTTCTTTTAATCACCGGTTTGAAGCACTTGTCGCCTGTGCATGTGAACGAGAGGTGAAGATGATGATTCAGTGTACGAGTACAGGATGAAGAGCCACTTTGGAGAGTGGGTTAAAATAGTGAGATTTGAAGATGCTGGCAATTCTCCAAATGAAACCCATCCCAAACTGCTGCTGTGAAGAAAGCTGCCCAAGATTTCTGGTCATTTAGCCCCTTGTCTCGTAGAAGCCGTGGGTCTGGGTGTGAGATTTCATCCCGACATCAACAAATAGAAGCCCCCGTTTCATAGGCATTTTTCATACAATGTGCTGCTCATTCAAGGGAGCTGTCCAGTTCAGCACCTGATGCACAACTTGACTGTCTTTCCAGAGAAATAAGCTATATTTATATCTTGCATGGAAATGGGATGATGTATGTAATCGAGGGAAGATTGATTACATTTATTCACTTCCGCCACATCTACACCCATTCCATTTTCAATCCTTGACTGATCAAATGCCCAGAATACATTTTATAGCGAACAAAGCCGATCAGCGCCAGCAAGGAAGAGCTGAAGAATGACAGCAATGGAAGGAAAATGAGAAGGAGTATAACTTCTTGTTTGATTTATTGCGTCTTTTCTATGACTGTTTTTTTTTTTTTGTTTGGCGTCATGTATAGATTAATATATACAGTTCTCTTTGCATGAACTTTTCTCTTGTGCCATTGCGGGAGTTTCCACCTCTTTTAAACCCAGGCACGCTTGTTTTTACTGAAATCAGTATTTGTATTTTTTATATCTGAATATTTGTTACAATATTATCGTCCAGTTCTTAATAGTCCATCGACACAGACAGGGTATGTGTAGATAAAGGCATAAAACATAATCATAAAAGGACAGACTGAATGTTATTTTGGGGAAGGGGTTTCAAACATCAGTATAACATGCTTTTCATTGCAATAAGTGATCATGCCTTTGTTGATAATGAAATATAATTTCAGAGTATGTTCAACAGCACTCTCACTGCAATTACATCAATGGGTTTTAGTATTTCAGTTGATTATTTATTTATTTGTTTGTTTTTGTATTCATAATGTTCAGTGTATGGTTTATTGTGCATGAGATATGAATATTTTTCAAGCTTATGAATTTATGAAGCAAAAAACTGTACACAAATGTCTCAACATTCTACAAATGAATTAATAAATAAATTCAGAGGATTCATTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU120988 True 1731 lncRNA 0.40 2 6890421 6892782

Neighbor

gene id symbol gene type direction distance location
CI01000018_06780816_06782576 KLHL34 coding upstream 106608 6779399 ~ 6783813 (+)
CI01000018_06774816_06776610 SMPX coding upstream 113372 6772087 ~ 6777049 (+)
CI01000018_06654341_06664818 GABRR3A, GABRR3 coding upstream 225515 6654341 ~ 6664906 (+)
CI01000018_06624871_06636641 KIAA1524 coding upstream 253447 6624871 ~ 6636974 (+)
CI01000018_06609697_06619473 NA coding upstream 270450 6609325 ~ 6619971 (+)
CI01000018_06968918_07004161 SH3KBP1 coding downstream 76136 6968918 ~ 7004379 (+)
CI01000018_07011537_07045271 MAP3K15, MAP3K5 coding downstream 118179 7010961 ~ 7045271 (+)
CI01000018_07062582_07063654 NA coding downstream 169676 7062458 ~ 7064264 (+)
G106403 NA non-coding upstream 70651 6803075 ~ 6819770 (+)
G106338 NA non-coding upstream 131537 6756440 ~ 6758884 (+)
G106387 NA non-coding upstream 148603 6739229 ~ 6741818 (+)
G106385 NA non-coding upstream 153845 6733032 ~ 6736576 (+)
G106467 NA non-coding downstream 42089 6934871 ~ 6935093 (+)
G106687 NA non-coding downstream 173272 7066054 ~ 7066343 (+)
G106429 NA other upstream 4096 6881611 ~ 6886325 (+)
CI01000018_05217404_05218896 NA other upstream 1667805 5216452 ~ 5222616 (+)
G104670 NA other upstream 2130653 4755801 ~ 4759768 (+)
CI01000018_04368179_04375192 NA other upstream 2517009 4368179 ~ 4375866 (+)
G104258 NA other upstream 3198902 3691089 ~ 3691519 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022970 camk2n2 coding NC_007135.7 CM002908.2 25692802 ~ 25695056 (+)