G106289


Basic Information

Item Value
gene id G106289
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 6621169 ~ 6621445 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU120804
CCACATATGTCAGCATGACAAACTTACCCCCGGTTTCACACACAAAGCTAGTCTATAGACTAAAATGCATGTTTGAGCTGTTTTAACTGAAAGCAACTTACACTGACATATTAAAATATGTTAGTGCCATTGTTTTGTCTCAAGATGTACACCAGTAATGTTTTTTTCTAGTGTACATTTATAAAAGATACTTAAATATCCTAAATGAACTAAGGTCTAATCCTGGCTTAATCTAAGCCCTGTCTGTGAAACCAGGCCTTAGTGTATTTACTAGTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120804 True 277 lncRNA 0.35 1 6621169 6621445

Neighbor

gene id symbol gene type direction distance location
CI01000018_06609697_06619473 NA coding upstream 1198 6609325 ~ 6619971 (+)
CI01000018_06530603_06532567 AMER2 coding upstream 88094 6529471 ~ 6533075 (+)
CI01000018_06516545_06524220 NA coding upstream 95765 6516545 ~ 6525404 (+)
CI01000018_06464987_06470722 PCYT1BA, PCYT1B coding upstream 150203 6464987 ~ 6470966 (+)
CI01000018_06417005_06423657 TRIM55, TRIM55B coding upstream 197332 6417005 ~ 6423837 (+)
CI01000018_06624871_06636641 KIAA1524 coding downstream 3426 6624871 ~ 6636974 (+)
CI01000018_06654341_06664818 GABRR3A, GABRR3 coding downstream 32896 6654341 ~ 6664906 (+)
CI01000018_06774816_06776610 SMPX coding downstream 153371 6772087 ~ 6777049 (+)
CI01000018_06780816_06782576 KLHL34 coding downstream 157954 6779399 ~ 6783813 (+)
CI01000018_06968918_07004161 SH3KBP1 coding downstream 347473 6968918 ~ 7004379 (+)
G106300 NA non-coding upstream 28338 6592555 ~ 6592831 (+)
G106276 NA non-coding upstream 65743 6549578 ~ 6555426 (+)
G106150 NA non-coding upstream 74005 6545849 ~ 6547164 (+)
G106160 NA non-coding upstream 129424 6491243 ~ 6491745 (+)
G106255 NA non-coding upstream 162651 6458305 ~ 6458518 (+)
G106279 NA non-coding downstream 19061 6640506 ~ 6642139 (+)
G106376 NA non-coding downstream 101800 6723245 ~ 6723530 (+)
G106380 NA non-coding downstream 106467 6727912 ~ 6728188 (+)
G106383 NA non-coding downstream 110826 6732271 ~ 6732541 (+)
G106385 NA non-coding downstream 111587 6733032 ~ 6736576 (+)
CI01000018_05217404_05218896 NA other upstream 1398553 5216452 ~ 5222616 (+)
G104670 NA other upstream 1861401 4755801 ~ 4759768 (+)
CI01000018_04368179_04375192 NA other upstream 2247757 4368179 ~ 4375866 (+)
G104258 NA other upstream 2929650 3691089 ~ 3691519 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 4635858 1924489 ~ 1985311 (+)
G106429 NA other downstream 260166 6881611 ~ 6886325 (+)

Expression


Co-expression Network