Gene
RNA
| Item | Value |
|---|---|
| gene id | G106276 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000018 |
| NCBI id | null |
| chromosome length | 7078422 |
| location | 6549578 ~ 6555426 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: ubiquitin conjugation factor E4 A-like |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU120786 | False | 698 | lncRNA | 0.53 | 3 | 6549578 | 6553197 |
| TU120787 | True | 435 | lncRNA | 0.49 | 2 | 6552590 | 6555426 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000018_06530603_06532567 | AMER2 | coding | upstream | 16503 | 6529471 ~ 6533075 (+) |
| CI01000018_06516545_06524220 | NA | coding | upstream | 24174 | 6516545 ~ 6525404 (+) |
| CI01000018_06464987_06470722 | PCYT1BA, PCYT1B | coding | upstream | 78612 | 6464987 ~ 6470966 (+) |
| CI01000018_06417005_06423657 | TRIM55, TRIM55B | coding | upstream | 125741 | 6417005 ~ 6423837 (+) |
| CI01000018_06407142_06414203 | DNAJC5B, DNJC5 | coding | upstream | 135279 | 6406410 ~ 6414299 (+) |
| CI01000018_06609697_06619473 | NA | coding | downstream | 53899 | 6609325 ~ 6619971 (+) |
| CI01000018_06624871_06636641 | KIAA1524 | coding | downstream | 69445 | 6624871 ~ 6636974 (+) |
| CI01000018_06654341_06664818 | GABRR3A, GABRR3 | coding | downstream | 98915 | 6654341 ~ 6664906 (+) |
| CI01000018_06774816_06776610 | SMPX | coding | downstream | 219390 | 6772087 ~ 6777049 (+) |
| CI01000018_06780816_06782576 | KLHL34 | coding | downstream | 223973 | 6779399 ~ 6783813 (+) |
| G106150 | NA | non-coding | upstream | 2414 | 6545849 ~ 6547164 (+) |
| G106160 | NA | non-coding | upstream | 57833 | 6491243 ~ 6491745 (+) |
| G106255 | NA | non-coding | upstream | 91060 | 6458305 ~ 6458518 (+) |
| G106239 | NA | non-coding | upstream | 111489 | 6437862 ~ 6438089 (+) |
| G106235 | NA | non-coding | upstream | 117967 | 6431406 ~ 6431611 (+) |
| G106300 | NA | non-coding | downstream | 37129 | 6592555 ~ 6592831 (+) |
| G106289 | NA | non-coding | downstream | 65743 | 6621169 ~ 6621445 (+) |
| G106279 | NA | non-coding | downstream | 85080 | 6640506 ~ 6642139 (+) |
| G106376 | NA | non-coding | downstream | 167819 | 6723245 ~ 6723530 (+) |
| G106380 | NA | non-coding | downstream | 172486 | 6727912 ~ 6728188 (+) |
| CI01000018_05217404_05218896 | NA | other | upstream | 1326962 | 5216452 ~ 5222616 (+) |
| G104670 | NA | other | upstream | 1789810 | 4755801 ~ 4759768 (+) |
| CI01000018_04368179_04375192 | NA | other | upstream | 2176166 | 4368179 ~ 4375866 (+) |
| G104258 | NA | other | upstream | 2858059 | 3691089 ~ 3691519 (+) |
| CI01000018_01924489_01985310 | SEMA5A | other | upstream | 4564267 | 1924489 ~ 1985311 (+) |
| G106429 | NA | other | downstream | 326185 | 6881611 ~ 6886325 (+) |
