CI01000018_06407142_06414203 (DNAJC5B, DNJC5)


Basic Information

Item Value
gene id CI01000018_06407142_06414203
gene name DNAJC5B, DNJC5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 6406410 ~ 6414299 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_06407142_06414203.mRNA
GTTTAAAAGTCAGTTATGGCAGATAACGTGTGTCCAACCTCAGAAACCAGACATTAGTCACCAAACATCTTCCATCAAAGCGTTGCACAACCACCAGACACTGAAACCTAATGAACCTTGTTGGTAACCATGTTAAACTGGCCTAAAGTTACCTGAGCTCATGACTAGTTCCATGTATAATTTATCTCCTCAGTAATCTACTCACCTTCAGAGAAGGAACCTGACTCCATTAGCCTGTCTACCTGCTCTGGAGAAGGACTTAGGTTTGGAGTCTGTTAACAGGTAAGAAAACTAATGATCTTCTTTGGGACTTAGGGCTCTGATTGTCCCTTTTTTGCTTCTCACTTTTGAGTAGTCAGCCATTGTAAAGCTCAACAGAGATGGCTGTATAATTTTTTTTTAGAACTATTTAATATTCAATGAAGGCTCATTATTATGAAAGATGGAATTATTCAGAAGTGGGGGTTGGAGGTTGTTGGACAGTTATATATTCTCTGCAATAACCTTCCAATGGATGTCTTTTCTTAAAAACAGAGGGATTGCTTGCAAACTTATGTAAACAAAAAGTCAACCAGGTCTGGGTTGTTGTGGAAAGAGTGACGTTGTAAGTCTCAAACAAAACGTCATTTGTATCTTGTTCACCACACAGGAGAACCGGACCTGACCTACTGTCTTATACAATTTATTGACGGTTGATTTGTTCTTTTGATGTTAAGGTAATGGTTTAAGATCATGGCTGAACAAAGGCAACGGGCCCTGTCCACATCAGGAGAGGCTCTGTACCAGATTCTTGGCCTTGACAAGAACTGCACCCATGATGACATCAAGAGATCCTACAGGAAGCTCGCTTTGAAATATCATCCTGACAAGAACCCCGAGAACCCTGATGCCACTGACAAATTTAAAGAGCTCAACAATGCCCATGCGGTGCTGTCTGACGTCACTAAGAGGAACATTTATGACAAGTACGGCTCCCTGGGTCTCTATGTGTCGCAGCAGTTTGGGGAGGAGAATGTGAACACGTACTTCATGCTCTCCAGCTGGTGGGCTAAGGGTCTGTTTGCCATCTGCGGCTTGCTGACAGGTTGCTATTTCTGTTGTTGTCTGTGCTGCTGTTTCAACTGCTGTTGTGGAAAGTGCAAACCGCACACACCTGGAGAAGAGGACCCTGAGTGCTATGTGTCTCCTGAAGACCTGGAGGAGCAGATCCGTACGGACAACGAGAGAGATGGCGACACTCCAATTGTGCTGCAGCCAACCAATGCTAGTGAGAAGACCCAGCTGATCGGTGATGGACACAGAACATACACCTAAATGCAAATGAGTCATGATAGATACTAATTTTAAAAATCTTTTTGAATATATTGATGTCTTTTACAATATACTGCTTATTTTAGGACTGAGAAAGCA

Function

symbol description
dnajc5b Is expressed in neuromast and otic sensory epithelium. Orthologous to human DNAJC5B (DnaJ heat shock protein family (Hsp40) member C5 beta).

GO: NA

KEGG:

id description
K09525 DNAJC5; DnaJ homolog subfamily C member 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_06407142_06414203.mRNA True 1410 mRNA 0.43 4 6406410 6414299

Neighbor

gene id symbol gene type direction distance location
CI01000018_06386938_06390509 NA coding upstream 15808 6386217 ~ 6390602 (+)
CI01000018_06365094_06367593 MTFR1 coding upstream 38817 6365094 ~ 6367593 (+)
CI01000018_06352445_06352675 NA coding upstream 53248 6352445 ~ 6353162 (+)
CI01000018_06253286_06254071 BHLHE22 coding upstream 151494 6252701 ~ 6254916 (+)
CI01000018_06243205_06245283 NA coding upstream 160589 6243007 ~ 6245821 (+)
CI01000018_06417005_06423657 TRIM55, TRIM55B coding downstream 2706 6417005 ~ 6423837 (+)
CI01000018_06464987_06470722 PCYT1BA, PCYT1B coding downstream 50688 6464987 ~ 6470966 (+)
CI01000018_06516545_06524220 NA coding downstream 102246 6516545 ~ 6525404 (+)
CI01000018_06530603_06532567 AMER2 coding downstream 115172 6529471 ~ 6533075 (+)
CI01000018_06609697_06619473 NA coding downstream 195026 6609325 ~ 6619971 (+)
G106222 NA non-coding upstream 55955 6350172 ~ 6350455 (+)
G106169 NA non-coding upstream 123206 6282921 ~ 6283204 (+)
G106136 NA non-coding upstream 154552 6251511 ~ 6251858 (+)
G105870 NA non-coding upstream 157822 6230600 ~ 6248588 (+)
G106235 NA non-coding downstream 17107 6431406 ~ 6431611 (+)
G106239 NA non-coding downstream 23563 6437862 ~ 6438089 (+)
G106255 NA non-coding downstream 44006 6458305 ~ 6458518 (+)
G106160 NA non-coding downstream 76944 6491243 ~ 6491745 (+)
G106150 NA non-coding downstream 131550 6545849 ~ 6547164 (+)
CI01000018_05217404_05218896 NA other upstream 1183794 5216452 ~ 5222616 (+)
G104670 NA other upstream 1646642 4755801 ~ 4759768 (+)
CI01000018_04368179_04375192 NA other upstream 2032998 4368179 ~ 4375866 (+)
G104258 NA other upstream 2714891 3691089 ~ 3691519 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 4421099 1924489 ~ 1985311 (+)
G106429 NA other downstream 467312 6881611 ~ 6886325 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location