G105870


Basic Information

Item Value
gene id G105870
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 6230600 ~ 6248588 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU120352
ATTTTTTTTTTTTTTTTTTTTTTTTTATTGTTATTATTTTACTCTAATGCTAAAAGAAAATTACTTTATACATTAATGAAATATCATCGCTGTCGGGGAGAAACCTTGTATCTCCTTTATCTTTTTTTTTTTTCTCTTAAATCATTACTATTTTCACCCTTTATGTCTGTCTGTGGGTTTTGCAAATATTTAACTATGAAAAGTATTAAAAAGAGATTGTGACTAAACTCCAATGGATCATAAAACTGTCAGTCAAACCTCATAACTCCACCCCGCCTCAATCTTGCAAGAAGTGCTGCACGCAGTTTGGACCGTCTCTGCTTGTTTGCAATGCAAAGGTAAATAAAGAACTGGTTGTTTGAATAAGTACAACGTTTTCTTTACTCAAGAAACACTATATATACATAAAGGCCAGTGTTTTATGTATTTGAGGAAAGGAGAAGAGTGTCTTAGTCTAGCATTTGTCTTCGAGTATGTACTGTCTTAAATAGCCTGTGCGTGGCACTTTGTCTTTAATAATACAAGATTTTGGCCAAATGACAAAAAATATGCCTAAATAATAATAATAATAATAATAAAAAACTGCCCAGGATTGAAGAAAAATTAAATAAGCCGTACTAAAGACACTAAAGGAGCAAGGCTTCATAATACTGCTGCCCCAGCAGAGTTACGTAACACACGGCGTCAGAACAATTCAAGATGTCGGCGGAATGATGTTTATATCCACATCACATCCCATGGCCCTTTGCTACAAAAACTTGCCTAAGAACGTTGAAAATGTGCGATATAACGCATGTCTACATACTAAAATTCATCACACGCTGCAAAACTTGTATTAAATAAGCTTAGACGCTCAATGCAGAACAGTAACGCATCACATAAACTCTGCCATCATTATTCAGATCACGCGCGAGCCTTGACAGATCAGCACGCGCGGCCACAATTGCGCGAGGCGAGCTACTCTCGTATCAGAAGTATGCAGTAATTGGTATGAAGTGACCACTTTGAAATGATAAAATTTCTGCTCGCTAAAAAATAACATGTCTCGATTCATTGTGTTGCTATGCAACCAGTTTTTGTTAAAAGAACGAAAAGATCAGAACATATATATGGCGCAAGAGGACAGTTAAAATGGCATGTATAGAGCAACTACGCCACCTGCAGGAGAAGCAGGATTTAACTGCTGATTTCAAAGATTACTTGCATGCAAACACATTCGTTCGTGGAGTCAAATGATGCTAATTTATGAATAATAGGCTAGTAGTTATTAAACGGCTACAGATCTCAGTGTACGAGGGTGAGTAAGAGGAAACAAACAGCGGATCAGAATAAGAGACTGAATGAAATATTAGCGTCATGCTTTTTGAATATTTCCCCTGTATCATTTATGTTAGAGTAGTCGTTGTCACATGACATCACCTGTATCATCTTAAAAATAATTATAATAGACCTATAATGTTCCTATATGTTTCTATGAAAAAATCCAATTTTGTAAAGGGAAAAATGTGTTTACTTTCAGAAAATACAGAGTTAAGTCACTGCATCATCATCTATAATCATGTGGGGGAGGGCAGTTCCCAGTAGCCTTCTGGACAGTGTGCTGATATCTGGTGCTGTTATGCACCTTGAATCCTGAGTTTGAATCCTGCCTCGTGGCCTTTTCCGAATTCCGTCTGCCTTCTCTCTCCAATTTTCAACATATTTCATATCATTATAAAGGGCAAAAAGGCAAAAAATGAACATTTAAACTGATGCTGGTTAAAGTCCATCCACACACAGGATAGAATCAGCATCTTTTAAGTCACTGCATCAACATCTCTCATTGTATGGGGGGGGAGACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120352 True 1841 lncRNA 0.37 2 6230600 6248588

Neighbor

gene id symbol gene type direction distance location
CI01000018_06143719_06147236 YTHDF3 coding upstream 83018 6143719 ~ 6147582 (+)
CI01000018_06089733_06092218 NA coding upstream 138237 6089733 ~ 6092363 (+)
CI01000018_06045598_06051674 LIPIB coding upstream 178618 6045251 ~ 6051982 (+)
CI01000018_06039348_06042009 NA coding upstream 188568 6039348 ~ 6042032 (+)
CI01000018_06015189_06019310 CHODL coding upstream 211008 6014472 ~ 6019592 (+)
CI01000018_06253286_06254071 BHLHE22 coding downstream 4113 6252701 ~ 6254916 (+)
CI01000018_06352445_06352675 NA coding downstream 103857 6352445 ~ 6353162 (+)
CI01000018_06365094_06367593 MTFR1 coding downstream 116506 6365094 ~ 6367593 (+)
CI01000018_06386938_06390509 NA coding downstream 137629 6386217 ~ 6390602 (+)
CI01000018_06407142_06414203 DNAJC5B, DNJC5 coding downstream 157822 6406410 ~ 6414299 (+)
G105863 NA non-coding upstream 14990 6215337 ~ 6215610 (+)
G105848 NA non-coding upstream 38209 6191005 ~ 6192391 (+)
G105846 NA non-coding upstream 52826 6177559 ~ 6177774 (+)
G105802 NA non-coding upstream 145256 6075500 ~ 6085344 (+)
G105801 NA non-coding upstream 156168 6066369 ~ 6074432 (+)
G106136 NA non-coding downstream 2923 6251511 ~ 6251858 (+)
G106169 NA non-coding downstream 34333 6282921 ~ 6283204 (+)
G106222 NA non-coding downstream 101584 6350172 ~ 6350455 (+)
G106235 NA non-coding downstream 182818 6431406 ~ 6431611 (+)
G106239 NA non-coding downstream 189274 6437862 ~ 6438089 (+)
CI01000018_05217404_05218896 NA other upstream 1007984 5216452 ~ 5222616 (+)
G104670 NA other upstream 1470832 4755801 ~ 4759768 (+)
CI01000018_04368179_04375192 NA other upstream 1857188 4368179 ~ 4375866 (+)
G104258 NA other upstream 2539081 3691089 ~ 3691519 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 4245289 1924489 ~ 1985311 (+)
G106429 NA other downstream 633023 6881611 ~ 6886325 (+)

Expression


Co-expression Network