CI01000018_06516545_06524220


Basic Information

Item Value
gene id CI01000018_06516545_06524220
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 6516545 ~ 6525404 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_06516545_06524220.mRNA
CTATTTAGGATATTGTCATCCATTCCCTGTGCTGACGACGCTAAAAACAGCGGCATCATGGAGCACATCCGCACACCAAAGGTAGAACAAGTGAAGCTGCTGGATCGCTTTAGCAACAAGTCCGTCACAGGAACCCTCCATTTGACTGCTACACATCTGATCTTCGTGGAGAGTAATTCAGCCAGTGCCCAGGAGATATGGATCCTGCATCATCACATCGCCTCAGTGGAGAAACTGTCCCTCACAACCAGTGGCTGCCCGCTCCTCATTCAGTGCCGGAATTTCCGGGTTGTCCACTTTGTGATTCCCAGAGAGCGTGATTGTCATGACATCTACAGCTCTCTGCTCAGGCTACTGAGACCAGTGTCCTATGATGAGCTGTATGCGTTCTCCTACAACCCAAAGCAGAATGACCAACAGAGAGAGGAGGGGTGGCAACTCATAGACCTCGCAGCTGAGTTTGAACGGATGGGTGTGCCATGTGACCAGTGGCAAATGACAGATGTTAACAGGGAGTACAAGGTGTGTGAGACATATCCAAGAGACTTATACGTACCCATTACGGCCAGTAAACCCATCATAGTCGGAAGCTCCAAGTTCAGAAGCAAAGGCCGTTTTCCTGTTCTCACATACTTCTACCAGGAGAAGAAGGCGGCAGTGTGTCGGTGCAGTCAGCCTCTCTCTGGCTTCAGCGCTCGCTGTTTGGAAGACGAACACATGCTTCAGGCCATCAGCAAGGCCAATCACAACAGCCGATATATATACGTGATGGATACGCGGCCTAAGTTGAACGCATTGGCGAATCGTGCGGCAGGGAAAGGCTATGAGAATGAAGACAACTACTCTAATATCCGCTTCCAGTTTGTGGGCATTGAGAACATCCATGTGATGAGGGGAAGTTTGCAGAAGCTTCTGGAAGTGATAGGAACGCGCTCCCTTTCAATGCCCGATTACCTGGTTGGACTGGAAAACAGCGGATGGTTGCGTCATATCAAAGCCATTATGGATGCAGCTATATTCCTTGCCAAGGCTGTGACTGTAGAGGGCGCTAGTGTCCTAGTGCACTGCTCTGATGGATGGGATCGGACGGCTCAGGTCTGCGCGCTAGGATCTCTATTGATGGATCCGTACTATCGCACCATTAAAGGTTTCATGGTACTTATTGAAAAAGACTGGATTTCCTTTGGACATAAGTTTGCAGACAGGTTAGCATGATTCTCTGTTTGGTTCTTGACTCAAGTTGGTTGAAGAGTCTGAGGCCTTGTTTCCACCTGGTATTAAGATGCGTTTTGGTCGATCGGAACACAAGTGGACGACGCTAAATACAGGTGTAAACAGGGTGTAAAACGTTTTGAGCTCGTCCACTTTCGACCACTTCCAGAGGTGGTCGAAAACACATTCGACCGGATGGCTTTCATAGTGTAAACGCTCATGTGGTAGAATGTGTTCGAACAGCCACTTAAGACCGCCTTCTCTCCACCTACTGACCTAATGCGTAAACATTATGGGAAGCACGCTAGCCAGATGCGATTTAAACTTTGTCGGCTGAAGACCCAAGTTTGGTTTGAAGACGAAAAACGTACCAAGCAAGTGGATGATGCTAAATACAGGTGTAAACGGGGTGTAAAATGTTTTGAGCTTGTCCACTTTTGACCACTTCCAGAGGTAGTCGAAAACACATTCGACCGGATTGCTTTTGTAGTGTAGATGATAATGTGGTCGAATGTGTTCGAACAGCCACTAAAGAGCGCCTACTGTCCTAATGCGTAAACATTATGGGAACCGTGCTAGCCAGACGCAATTTAAACTTTGTCGGTTGAAGACCCAAATTTGGTTTGAAGATGAAAAATGTACCAAGCACAATGTTCTCTCACCATTCCTGATTTCTAACACGCGTTCACAGTGTTTTGCGTGGTCTTGTGGCTGTCAGAGCAGAAATGATAGCTGATGCTCTCCGTGTTTTTCCTGTCGTCTCCGGGTGTGTTCATATGTAAATTGCACAAGTTTATTTTGTCCAATAGATCGAAAGATCTGAAAGAACCCATACATTTGCCTGCCTATAGTCCCTCCCCTTGAAGAAATCAGGACAGAAGTGGTTGAAAGTAGACAAAAGAGACAGATTAAAACACCAGGTGTAAACGGGTATGTGTCTCCCTCATCCACTTGTGATCCGATCGACCAAAATGCATCTTAATACCAGGTGTAAACAGTTGTCGTGAAGGGTGAAAAGACTGATGCTGTCCAGAATGAAGGATGACTGCAGAGATGCCCTGCACACAATTTTTGGTTTGGCAGTCTGGTCGATTGTCGGGGGTTAGTTAGGAACTCAAAAGGTTAATGTGATGTCATAGAGCAGGTCAAAGGTCATATTTACTTAAAGGTGATTATATGAGCTAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_06516545_06524220.mRNA True 2399 mRNA 0.47 10 6516545 6525404

Neighbor

gene id symbol gene type direction distance location
CI01000018_06464987_06470722 PCYT1BA, PCYT1B coding upstream 45579 6464987 ~ 6470966 (+)
CI01000018_06417005_06423657 TRIM55, TRIM55B coding upstream 92708 6417005 ~ 6423837 (+)
CI01000018_06407142_06414203 DNAJC5B, DNJC5 coding upstream 102246 6406410 ~ 6414299 (+)
CI01000018_06386938_06390509 NA coding upstream 125943 6386217 ~ 6390602 (+)
CI01000018_06365094_06367593 MTFR1 coding upstream 148952 6365094 ~ 6367593 (+)
CI01000018_06530603_06532567 AMER2 coding downstream 4067 6529471 ~ 6533075 (+)
CI01000018_06609697_06619473 NA coding downstream 83921 6609325 ~ 6619971 (+)
CI01000018_06624871_06636641 KIAA1524 coding downstream 99467 6624871 ~ 6636974 (+)
CI01000018_06654341_06664818 GABRR3A, GABRR3 coding downstream 128937 6654341 ~ 6664906 (+)
CI01000018_06774816_06776610 SMPX coding downstream 249412 6772087 ~ 6777049 (+)
G106160 NA non-coding upstream 24800 6491243 ~ 6491745 (+)
G106255 NA non-coding upstream 58027 6458305 ~ 6458518 (+)
G106239 NA non-coding upstream 78456 6437862 ~ 6438089 (+)
G106235 NA non-coding upstream 84934 6431406 ~ 6431611 (+)
G106222 NA non-coding upstream 166090 6350172 ~ 6350455 (+)
G106150 NA non-coding downstream 20445 6545849 ~ 6547164 (+)
G106276 NA non-coding downstream 24174 6549578 ~ 6555426 (+)
G106300 NA non-coding downstream 67151 6592555 ~ 6592831 (+)
G106289 NA non-coding downstream 95765 6621169 ~ 6621445 (+)
G106279 NA non-coding downstream 115102 6640506 ~ 6642139 (+)
CI01000018_05217404_05218896 NA other upstream 1293929 5216452 ~ 5222616 (+)
G104670 NA other upstream 1756777 4755801 ~ 4759768 (+)
CI01000018_04368179_04375192 NA other upstream 2143133 4368179 ~ 4375866 (+)
G104258 NA other upstream 2825026 3691089 ~ 3691519 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 4531234 1924489 ~ 1985311 (+)
G106429 NA other downstream 356207 6881611 ~ 6886325 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022960 mtmr6 coding NC_007135.7 CM002908.2 25032340 ~ 25059539 (+)