CI01000018_04449934_04462663


Basic Information

Item Value
gene id CI01000018_04449934_04462663
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4449384 ~ 4462831 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_04449934_04462663.mRNA
TAATAAAAGCAGCCACTGTGTCCAGCACTAACATTATTAAACATAAGTTACATATTTAAGAAAACAAGTTTTGGTTTTCATTGGAACATTGTTCAGAGTCTGGATGTGAGGAATCAATGAGCGTGAGTATGTGTGTGTGAGTACATACTCCTGCCATCGCTCCTTTTCTGCTCTGCCATCACTGGTTTTTACCACAAGTTCTCTCTTTCATATGCCTGTCTGTTCATTTTTCCATCCTTTCCACTCGTCCTTCTCTTTCTCTTTCATCCAGGATGAGAAGCAGCTCCCCTCTGAGCTTATAGAGTGTGTTTTTGGCAGTTGTGTCCAGTTTGTGTATGCGAGTGTGTGCGTGTTTGTGAAAGGAAAAAAGAAAGGGAGAAAAAGAGAGAAAGACAGAGAGTTCTGAGAAGTAGAGCCTGCTGTGCTAGATTAATACTGGACGCTCGGAGGGGGGCTTCCCCCATTCATTACTGACTGATGCCCATACCAAATTGATTTATGGAAGCGGCCCTTAATCAATTATGTGTGGAGAGAGAGAAAAGAGAGAAGAATGCAGGGAGAGGGCAATAAGAGAGCACAGAGAGACAGAGGAGTGGAGTGTATGGAGTGTTTTAAAAAGCTCTTGTCATGCTGCTTCTATTGTCTGCTGGAGAGGGCAAGGGGGTGCTTGAGGAGGGGGGCCGTTCATGCTGTGAGCCTGTTTCTCCGGCCTGTCAGAACTCTATCTGAGACTCAGCCGGAACTAATCAACTCCAATAGGCCTCTCCACTACCCACAATGCACCGTGCCTCGCTGGGGGCCGGTCGAGGATATTGCATCAAGTGCTGATGAAAGAGAAAATGTGAGTGAATGTGCTTCATTGGGAAGTGAGAGGGTGTTGTGGCTCTTCATGAAGATGCTTCTGGTGGATGCCCTCTATCACCTGAGTCCTCTGCTAGACTGTGTTATATCAGTAGGGCTGCTCTCTAGAGAAAACCGTTATGAAATTGACGCTGAGCGAACGCCACCCAACAAAGCCCGAAAACTTCTAGAGATTGTCGACGCTCAGATGGACGAAAGCAGTGCCTCTAGATTCATGGAGTGTCTGAAGAAATGCAAGAAACATTACCCGCGTCTACGAACCTGGTTGGCAGAAGAAGATCAGTTCCAATCAGCAAGTGTTCAGCAAGGTCCAACAGTCTCCTACGATCTCTTCTCTAGAGGCATTCTGACTCAGTTGGAGCTGGAAAATATCGAAGCAATACTCATCCCAACCAAGCAAGCAAAAACCCTGCTGTCCATCTGCCTGAAGAAAGGAGAAAAAGCATGCAAGAGCTTTTACACAGCGCTACAAAATGAGGACAAACAGCTAGCCGAGGAACTTAACGTGAATAGTTTAGTGGAAGAACTTAATAAAGAGCCTGAAAGCAACAGTGTGCAGATGGCAGTGGAGGAAACCAGAGGTCACTTGAGGGCAGCTTTACCTCTGTCAGGAGGCCTGCAGCAGGTCATGGCTCAGCTGGGCTTGACTGTGGGGGATGAGATTAGGTTTAATGTCTGTGAGGTTGGTGTGGCGGTGGGTTTGCCACGTCGGACGGTCAGAGAATACCTTCTCGAAGGGGTCGCAATAGAAGACTCAGCCCAGCTGGAGGCTCTAGTGTCCCTGTATATGGAGAAGACGAAGGACGCAGACAGACTACTGAGCAGAGTGGCAGAACTCAGCCCTCAGTGGGTCCAGCTCTCTGAGAGAGGGTGTCTGCTGTTGAGGTTGCTGCAAAAGGCTGAGACTCTCCTCCGCAGTGGGATCCACAGTCACCTGCACAGCTGGGACCACCTGCACGATCAGGACCACTTACGCAGCTGGGACCATCTGTGTCCTGGTGACTGCACGGATCAGCGCACAGTGTGGTCCATCTTCAGTTTTCTGGTGTGGGACTGTATGGCAGAGGTTCTGGAGGAGCCAGAGGCGAAGCCTAGTGGAGGCATACTAGGTATGATCGAGCAGCTGAGCGCCAGCGGCAGAGTGGAGGCGGCTTTGCTGCAGGAAGTGGAGCAGTGCTGGACTGAAGGAGATGCTGAGAGTCTGCTGCAGAGTGTGAGAGTCCTCGCTCAGGTGCTACGAGACCTGCATCCCCTTCAGGAAGGCCTCCAGCTGTCCTCTTCAGTTGAGGGGTTGTTTTCCTGCAGGCCCAGCAGGCTACACCGGGTCACTTCCTTCCAGGGCGTCTCTGCACGGGTCATCCGTAAAGCTCTGAGCAGCATGGTTCCATCCTCCTCGGACCAGGATGCAACCCCTCTGGCTAGACAGTATGTGGAGGCTTGTATTCGTATCGCACATCTCCTAGACGTGGTGCAGGCCACTCGAACCACCACTGATTTTTCAAACGCGCCCATTGCTACAGTCACTCAACATGTGCAGTTTGTCTTGTCAAATCCTGCGTTTAACTCCGAAGCCTTTGACGCTGGAGTCCGACATCGCTTGCTTTCTGTGTTGGAGTTCAATCCTGCGCAGCTGGGCCTGGGCTCTCTCATGCAGCTGCACCAGGAGACCCTATCTGAATTGCAGAGCTACTTACAACTCGGCGAGCACCACAACTTCCAGTTCATTCTGGAATCGGTACGGATAATTGGCCCCGCGAAGCTGTTTTCCGTCAACAGGGTTCACGGGCCTGTCGCCATCGATAATGGGATGGAAGAGGTCCTGCGTTTTATCACATCAGAACCCACTTCTTTTCTGGTACGGCTGCATTGTCTTTGCTATGAAGAGGAGAGGGGACGCTTTAAGGTGTGCGCGCCACGCTGCGCATGCATGTATCTGCTCAAGGCAGAGGGGCTGCGCGACATGCAGTGGTGCAGTGGCAACATTCTGGCCGAGGTAGGTGGGAAAGTATGGGTCAGAGAGGGAGAAAGTGGCAGCTGGGATGAGCTACAGGCCCTGGCTCAGAGACACTCGGCTCAGCTCAGGGATGAAGGCTGCTGCTTTAAAGTCAAGACAGCCGGTTTGGAGTGCGAGGTCAAATTTATATATAGGAGTGGAAGGCTGTGGGCTATGCCACATAGGGACTGTGAAGTAGATTAAAAATATAGGTAGTTGACATGTTTGACATGCTGTACTTCATTAAAAGTATTTGAAAGAATATTTTTCAACATTTATAGATTAATTTTATGACCTTGTATTAAAGATTACATGGAGTATACTTTTAAAAATGAATTTGTAGCTATTTAACTACAAAAACATGAAAAGCAA

Function

NR:

description
hypothetical protein cypCar_00040473

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_04449934_04462663.mRNA True 3226 mRNA 0.50 9 4449384 4462831

Neighbor

gene id symbol gene type direction distance location
CI01000018_04384928_04393242 USF3 coding upstream 56026 4384928 ~ 4393358 (+)
CI01000018_04378035_04382378 NAA50 coding upstream 65888 4378035 ~ 4383496 (+)
CI01000018_04368179_04375192 NA coding upstream 73518 4368179 ~ 4375866 (+)
CI01000018_04322915_04335655 NA coding upstream 113544 4322915 ~ 4335840 (+)
CI01000018_04265169_04284528 DRD3 coding upstream 164764 4265169 ~ 4284620 (+)
CI01000018_04474455_04481868 SHISA2 coding downstream 11624 4474455 ~ 4481914 (+)
CI01000018_04563971_04573228 CDK8, CDK8.S coding downstream 101095 4563926 ~ 4573459 (+)
CI01000018_04579960_04588477 WASF3B, WASF3 coding downstream 117062 4579893 ~ 4588583 (+)
CI01000018_04598617_04598799 NA coding downstream 135454 4598285 ~ 4598841 (+)
CI01000018_04613416_04615346 RL21, MGC80700, RPL21P28, RPL21, GM10155, GM9104, RPL21.L, GM10163, GM10045, GM10095, RPL21-PS8 coding downstream 150392 4613223 ~ 4615360 (+)
G104522 NA non-coding upstream 146422 4302761 ~ 4302962 (+)
G104521 NA non-coding upstream 146950 4302199 ~ 4302434 (+)
G104519 NA non-coding upstream 155509 4293637 ~ 4293875 (+)
G104458 NA non-coding upstream 316349 4123943 ~ 4133035 (+)
G104452 NA non-coding upstream 339209 4109923 ~ 4110175 (+)
G104532 NA non-coding downstream 20388 4483219 ~ 4484054 (+)
G104548 NA non-coding downstream 76339 4539170 ~ 4554081 (+)
G104635 NA non-coding downstream 136184 4599015 ~ 4600102 (+)
G104605 NA non-coding downstream 153021 4615852 ~ 4616633 (+)
G104258 NA other upstream 757865 3691089 ~ 3691519 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 2464073 1924489 ~ 1985311 (+)
G102895 NA other upstream 2863722 1582913 ~ 1585662 (+)
G104670 NA other downstream 292970 4755801 ~ 4759768 (+)
CI01000018_05217404_05218896 NA other downstream 753849 5216452 ~ 5222616 (+)
G106429 NA other downstream 2418780 6881611 ~ 6886325 (+)

Expression


Co-expression Network