G104605


Basic Information

Item Value
gene id G104605
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4615852 ~ 4616633 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU118931
CATTATTTAGGCCTGGTTTCACAGACAGGGCTTAGCCTAAACCAGGATTAGGCCTTAGTTCAATTAGGATATTTAAGTAGCTTTTATAAATGTACACTAGGAAAAAATACTACTGATGTGCATCTTGAGACAAATCAATGGCTCTGGCATATTTTGAGATATGTCAGTGCAAGTTGCTTTCAGTTAAAACAGCTCAAACATGCATTTTAGTCTAGGACTAGATTAAGCCTTGTCTGTGAAACCGGGGGTAAGTCTAAAAGCAAAGCCATTATGTTTTAAATCTGTCCTGAAGATGGTTTTTTTTTTTTCCAGAAAGATGATAAAAAGTTCTGCAATTCGGATGCCCCCATTCTTTAGTCAAACGATTCATTCAGTTAGCGAAACATCACTTTTGCTCGGTGACGCGCAGTGGCTCTGTGGATTTGTTTGGAACTGTTCTCATTTGTGAAAAAGAGCAAAAATGTTTAAGTCTAAAATGAAAGTCACCTAATGTTAACTTGTTTATTGAACTGTTGTATGAAATCAATAGGCTATCACATTTGCAATTGTGCTGGTATTCAGAAAATAAGCACTCTATCCTGTTATAAATATTAAAAATGAGAACTCATACAAGGACATTTTTGCCCCATATATCTTGAATTTTGGGGGCATTTTAATTAATTTTGGGGACATATCTGCCCCTAGCCCCTGTTAATTTGCGTGATGGCAGGGGGTAGGGCTCTTTTTTGAGTGCAAGCGGATGCCCCTTCTGTGTTGTGAGGGCTGTTTGAAGTGAAATGGGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU118931 True 782 lncRNA 0.38 1 4615852 4616633

Neighbor

gene id symbol gene type direction distance location
CI01000018_04613416_04615346 RL21, MGC80700, RPL21P28, RPL21, GM10155, GM9104, RPL21.L, GM10163, GM10045, GM10095, RPL21-PS8 coding upstream 492 4613223 ~ 4615360 (+)
CI01000018_04598617_04598799 NA coding upstream 17011 4598285 ~ 4598841 (+)
CI01000018_04579960_04588477 WASF3B, WASF3 coding upstream 27269 4579893 ~ 4588583 (+)
CI01000018_04563971_04573228 CDK8, CDK8.S coding upstream 42393 4563926 ~ 4573459 (+)
CI01000018_04474455_04481868 SHISA2 coding upstream 133938 4474455 ~ 4481914 (+)
CI01000018_04623186_04625739 NA coding downstream 6119 4622752 ~ 4625849 (+)
CI01000018_04649969_04650862 NA coding downstream 31995 4648628 ~ 4650914 (+)
CI01000018_04654210_04656581 PDX1 coding downstream 37096 4653729 ~ 4657095 (+)
CI01000018_04677346_04694247 PAN3 coding downstream 60526 4677159 ~ 4694627 (+)
CI01000018_04823817_04825235 SAT1B, SAT1, SAT1A.1, SAT1A.2 coding downstream 207184 4823817 ~ 4825299 (+)
G104635 NA non-coding upstream 15750 4599015 ~ 4600102 (+)
G104548 NA non-coding upstream 61771 4539170 ~ 4554081 (+)
G104532 NA non-coding upstream 131798 4483219 ~ 4484054 (+)
G104594 NA non-coding upstream 161533 4454104 ~ 4454319 (+)
G104659 NA non-coding downstream 122644 4739277 ~ 4740746 (+)
G104660 NA non-coding downstream 124211 4740844 ~ 4741148 (+)
G104662 NA non-coding downstream 125848 4742481 ~ 4743415 (+)
G104664 NA non-coding downstream 132302 4748935 ~ 4749640 (+)
G104665 NA non-coding downstream 133093 4749726 ~ 4750331 (+)
CI01000018_04368179_04375192 NA other upstream 242440 4368179 ~ 4375866 (+)
G104258 NA other upstream 924333 3691089 ~ 3691519 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 2630541 1924489 ~ 1985311 (+)
G102895 NA other upstream 3030190 1582913 ~ 1585662 (+)
G104670 NA other downstream 139168 4755801 ~ 4759768 (+)
CI01000018_05217404_05218896 NA other downstream 600047 5216452 ~ 5222616 (+)
G106429 NA other downstream 2264978 6881611 ~ 6886325 (+)

Expression


Co-expression Network