G104665


Basic Information

Item Value
gene id G104665
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4749726 ~ 4750331 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU118992
AGACGCAGTGTGTCCTCATCCCTCTCCATGTAGTAGCGTTCCTCATTCTTGCTAAAAAGGACCTTGTTGGTTCCAGGTAGGCGACGCTGCAGTCGGGCCGGATTCACTCTCCGGAGTTCCTCAGCAATAGCGGGAGGAGCAGAGAATTTACTCCAGTAGTACACACAAAGACCTTCCACTCCTTCACTGTCATCAGGACACATGACTTTTAACAAGATGGCAACACCTAAAACTGATTTAGTTTGAGTTGATGCAAAATTGCAAATGCTAGCAGATGCCAAATGTATGATGACATAGAAACAGCTCACAAACAGTGATGCTGGGTAAGTTTGCACAGCTGAGCTTGAATAAGGCATCACACCTACACTACAATTCAAAAGTTTGGGTCTGTAAGATTTTTTTTAATGTTTTATGCTCACAGAGGCTTCATTTATTTGAACAAAAATACAATGAAAATAGAACTATTGTGAAACGTTATTACATTTTAAAATAACTGTCTTATTTTTTATATGTATATTTTAAAATGTAACCTATTCCTGTAATGGCAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU118992 True 606 lncRNA 0.39 1 4749726 4750331

Neighbor

gene id symbol gene type direction distance location
CI01000018_04677346_04694247 PAN3 coding upstream 55099 4677159 ~ 4694627 (+)
CI01000018_04654210_04656581 PDX1 coding upstream 92631 4653729 ~ 4657095 (+)
CI01000018_04649969_04650862 NA coding upstream 98812 4648628 ~ 4650914 (+)
CI01000018_04623186_04625739 NA coding upstream 123877 4622752 ~ 4625849 (+)
CI01000018_04613416_04615346 RL21, MGC80700, RPL21P28, RPL21, GM10155, GM9104, RPL21.L, GM10163, GM10045, GM10095, RPL21-PS8 coding upstream 134366 4613223 ~ 4615360 (+)
CI01000018_04823817_04825235 SAT1B, SAT1, SAT1A.1, SAT1A.2 coding downstream 73486 4823817 ~ 4825299 (+)
CI01000018_04834805_04838328 ROPN1L coding downstream 84160 4834491 ~ 4838400 (+)
CI01000018_04843213_04852105 ANKRD33BA coding downstream 91550 4841881 ~ 4853351 (+)
CI01000018_05217404_05218896 NA coding downstream 467073 5216452 ~ 5222616 (+)
CI01000018_05252991_05253583 PKIA coding downstream 502660 5252964 ~ 5254493 (+)
G104664 NA non-coding upstream 86 4748935 ~ 4749640 (+)
G104662 NA non-coding upstream 6311 4742481 ~ 4743415 (+)
G104660 NA non-coding upstream 8578 4740844 ~ 4741148 (+)
G104659 NA non-coding upstream 8980 4739277 ~ 4740746 (+)
G104605 NA non-coding upstream 133093 4615852 ~ 4616633 (+)
G104673 NA non-coding downstream 10269 4760600 ~ 4760832 (+)
G104625 NA non-coding downstream 34246 4784577 ~ 4785010 (+)
G104628 NA non-coding downstream 37815 4788146 ~ 4789520 (+)
G104677 NA non-coding downstream 46918 4797249 ~ 4800870 (+)
G104742 NA non-coding downstream 275640 5025971 ~ 5026354 (+)
CI01000018_04368179_04375192 NA other upstream 376314 4368179 ~ 4375866 (+)
G104258 NA other upstream 1058207 3691089 ~ 3691519 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 2764415 1924489 ~ 1985311 (+)
G102895 NA other upstream 3164064 1582913 ~ 1585662 (+)
G104670 NA other downstream 5470 4755801 ~ 4759768 (+)
G106429 NA other downstream 2131280 6881611 ~ 6886325 (+)

Expression


Co-expression Network