G104548


Basic Information

Item Value
gene id G104548
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4539170 ~ 4554081 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU118873
CTTGGTCAGCAGAAGAGACTTTTTTCAAAATCATTAAAACATTACTGACCCCAAACTTTTGAACGTTTGTGCAAATAAAAAAATAAAAAAACTAAGCAAAAATATTGTATTATTGTTTTCTTGTTGATAGTGCAAGTTAAATGCTGGTCCTTTGCATTTATATTAGACTAACAACAAAGAAAAAAAACTAAGTATTTTCCATTTCATCTAAAAAAGACAACAATAGAGCACTACAACAAAGATTTAATTGTTTGCAGCATCTTTAACATGGCTAATTTACAGCCACAAAAAGACCACAATAATGATAATGGAGACTTGTTCATGTGCACACTTTAAACAAAGAATACACTAAGAGTAGAACAAAACAAGCAAGAATAAATTCAAACTACAATGTAACCTTTTCCTGTTCCGTACAATGAAGACTTGAATGGACTCACCTGACATGGTTGTCACAAAATTTGGTGGTCTGGGCTCGGTTGAGCAGAACAATCCGCGCTGTGGCATCTATCGGGTCCGCCTGTGATGTGGTTCCGGACATCTCATCCTCTGCCTTGCGGTAGCCGGCGGCCGAGCACGCGGGTCCTGCACCTCCCTCGCTGTGGATCTTCTTCGACCGTCTGTTGAAATACATTCTGCACGCATGTGTGGAGCTTCCAGTAACAGGAGCGAGATGATGGCATACTCGAGCTTCAGCGGGGGTATGCGGGCCACAGGCGCAGGGATGCGGTGTTTGAAGGAAGCAACATAGTTCCCGATGATGGGTCACCCTCAGCAGCGCGCACTGGACCGGGCACGCGCTCCTGCCATCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU118873 True 810 lncRNA 0.44 2 4539170 4554081

Neighbor

gene id symbol gene type direction distance location
CI01000018_04474455_04481868 SHISA2 coding upstream 57256 4474455 ~ 4481914 (+)
CI01000018_04449934_04462663 NA coding upstream 76339 4449384 ~ 4462831 (+)
CI01000018_04384928_04393242 USF3 coding upstream 145812 4384928 ~ 4393358 (+)
CI01000018_04378035_04382378 NAA50 coding upstream 155674 4378035 ~ 4383496 (+)
CI01000018_04368179_04375192 NA coding upstream 163304 4368179 ~ 4375866 (+)
CI01000018_04563971_04573228 CDK8, CDK8.S coding downstream 9845 4563926 ~ 4573459 (+)
CI01000018_04579960_04588477 WASF3B, WASF3 coding downstream 25812 4579893 ~ 4588583 (+)
CI01000018_04598617_04598799 NA coding downstream 44204 4598285 ~ 4598841 (+)
CI01000018_04613416_04615346 RL21, MGC80700, RPL21P28, RPL21, GM10155, GM9104, RPL21.L, GM10163, GM10045, GM10095, RPL21-PS8 coding downstream 59142 4613223 ~ 4615360 (+)
CI01000018_04623186_04625739 NA coding downstream 68671 4622752 ~ 4625849 (+)
G104532 NA non-coding upstream 55116 4483219 ~ 4484054 (+)
G104594 NA non-coding upstream 84851 4454104 ~ 4454319 (+)
G104522 NA non-coding upstream 236208 4302761 ~ 4302962 (+)
G104521 NA non-coding upstream 236736 4302199 ~ 4302434 (+)
G104519 NA non-coding upstream 245295 4293637 ~ 4293875 (+)
G104635 NA non-coding downstream 44934 4599015 ~ 4600102 (+)
G104605 NA non-coding downstream 61771 4615852 ~ 4616633 (+)
G104659 NA non-coding downstream 185196 4739277 ~ 4740746 (+)
G104660 NA non-coding downstream 186763 4740844 ~ 4741148 (+)
G104258 NA other upstream 847651 3691089 ~ 3691519 (+)
CI01000018_01924489_01985310 SEMA5A other upstream 2553859 1924489 ~ 1985311 (+)
G102895 NA other upstream 2953508 1582913 ~ 1585662 (+)
G104670 NA other downstream 201720 4755801 ~ 4759768 (+)
CI01000018_05217404_05218896 NA other downstream 662599 5216452 ~ 5222616 (+)
G106429 NA other downstream 2327530 6881611 ~ 6886325 (+)

Expression


Co-expression Network