AMCG00016622 (pip4k2b)


Basic Information

Item Value
gene id AMCG00016622
gene name pip4k2b
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26199489 ~ 26212158 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016622
gaggaggagaaggatacataaatcaatccatcaaatacaaatataggtgtatatatataaatatccagCAGCCAGAAGCATGTCATCTAATTGCACCAGCGCGGCGGCGGTGAGCGCAAGTAAAACCAAGACGAAAAAGAAACACTTTATAGGCCAAAAAGTGAAATTGTTCCGAGCCAGCGAGCCCATCCTCAGCGTCCTGATGTGGGGAGTGAACCACACGATCAATGAGCTGAGCAACGTGCCCGTGCCCGTCATGCTGATGCCCGATGACTTCAAGGCCTACAGCAAGATCAAAGTGGACAACCACCTGTTCAACAAGGAGAACCTGCCCAGCCGCTTTAAGTTCAAGGAGTACTGCCCCATGGTGTTCCGCAACCTACGCGAGAGATTCTCCATCGATGACCAGGACTACCAGAACTCACTGACACGCAGTGCCCCGCTAAACAGCGACTCTCAGGGCCGCTTTGGCACGCGTTTCCTCACCACGTACGACCGGCGCTTTATCATCAAGACCGTGTCGAGCGAGGACATCGCCGAGATGCACAACATCCTCAAGAAATACCACCAGTTTATAGTGGAGTGTCATGGCAGCACACTGCTGCCTCAGTTCCTGGGGATGTACCGCCTCACGGTGGATGGTGTGGAGACATACATGGTTGTCACAAGGAACGTCTTCAGCCACCGGCTCGGCGTGCACCGCAAATACGACCTGAAGGGATCCACCGTGTCCAGAGAAGCCAGCGATAAGGAGAAGGCGAAGGATCTGCCCACTCTCAAAGACAATGACTTCCTGAATGACGGACTGAAGCTGCAGATCGGTGATGACAACAAGAAGATCTTCCTGGAGAAATTGAAGCGGGATGTGGAGTTCCTTGCCACTCTGAAGATCATGGACTACAGTCTGCTGGTGGGGATCCACGACGTGGAGCGCGCCGagcaggaggagatggaggTGGAGGAgcgggggggggaggaggaggagttcGAGGACGGTCTCGGGGGGGCCATGTGCACCGGCTCCTTCGGCACCCCCCCTGACAGCCCAGGGAACCCCCTCAATTTCCCCGGCTTCTTCGGCCCCGGGGAGATTGAGGTGATCTTTAGCCAGAGGAGGGGGCTCTGGATAACCTGCAGCACTGAGCCCAGCAGCTTGGAGACCTCTGTGGTGGGACGGGCTCCAGCGCTTTCACATCAGTCTGCCCGCAGGCCAGGGTTGGATGCAGCCCAGCTGTTGATTTCCAGAACTGAAGAGGGTCAGAGGATGGTGGAAGATGAGGTGTGGAGAGGGACTCCTCAGCTTCCATGTTCATGGTTAGATCCCTAG

Function

symbol description
pip4k2b Enables 1-phosphatidylinositol-4-phosphate 5-kinase activity; protein homodimerization activity; and purine ribonucleoside triphosphate binding activity. Involved in several processes, including 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process; negative regulation of 1-phosphatidylinositol-4-phosphate 5-kinase activity; and positive regulation of autophagosome assembly. Located in autophagosome; nucleoplasm; and plasma membrane.

NR:

description
PREDICTED: phosphatidylinositol 5-phosphate 4-kinase type-2 beta

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0016307 phosphatidylinositol phosphate kinase activity molecular_function

KEGG:

id description
K00920 PIP4K2; 1-phosphatidylinositol-5-phosphate 4-kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016622 True 1327 mRNA 0.55 10 26199489 26212158

Neighbor

gene id symbol gene type direction distance location
AMCG00016618 LOC107707532,LOC107675249,LOC103375888 coding upstream 1116 26194421 ~ 26198373 (+)
AMCG00016621 RPL23,rpl23,rl23 coding upstream 14629 26181399 ~ 26184860 (+)
AMCG00016610 NA coding upstream 52513 26137776 ~ 26146976 (+)
AMCG00016611 socs7 coding upstream 64714 26122437 ~ 26134775 (+)
AMCG00016613 NA coding upstream 96776 26099372 ~ 26102713 (+)
AMCG00016620 NA coding downstream 20956 26233114 ~ 26237577 (+)
AMCG00016619 NA coding downstream 49574 26261732 ~ 26264293 (+)
AMCG00016626 NA coding downstream 143447 26355605 ~ 26371140 (+)
AMCG00016631 NA coding downstream 199327 26411485 ~ 26416977 (+)
AMCG00016632 NA coding downstream 250165 26462323 ~ 26468002 (+)
G14623 NA non-coding upstream 33507 26165630 ~ 26165982 (+)
G14556 NA non-coding upstream 263908 25933951 ~ 25935581 (+)
G14510 NA non-coding upstream 521140 25672259 ~ 25678349 (+)
G14502 NA non-coding upstream 587800 25604639 ~ 25611689 (+)
G14455 NA non-coding upstream 776463 25422443 ~ 25423026 (+)
G14695 NA non-coding downstream 1136 26213294 ~ 26215317 (+)
G14703 NA non-coding downstream 22168 26234326 ~ 26304342 (+)
G14704 NA non-coding downstream 27012 26239170 ~ 26241244 (+)
G14755 NA non-coding downstream 167893 26380051 ~ 26382420 (+)
G14768 NA non-coding downstream 185491 26397649 ~ 26397927 (+)
AMCG00016607 NA other upstream 249313 25940528 ~ 25950176 (+)
AMCG00016598 NA other upstream 440563 25725253 ~ 25758926 (+)
AMCG00016584 NA other upstream 794649 25370296 ~ 25404840 (+)
AMCG00016566 NA other upstream 1042028 25150348 ~ 25157461 (+)
G14361 NA other upstream 1065610 25133198 ~ 25133879 (+)
AMCG00016625 mllt10,LOC106942732 other downstream 73644 26285802 ~ 26302514 (+)
AMCG00016633 NA other downstream 215181 26427339 ~ 26433656 (+)
AMCG00016640 NA other downstream 277780 26489938 ~ 26499242 (+)
AMCG00016638 krt222 other downstream 315161 26527319 ~ 26548212 (+)
AMCG00016635 NA other downstream 387935 26600093 ~ 26657425 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_07172745_07186598 PIP4K2AA, PIP4K2AB, PIP4K2A coding CI01000004 null 7172249 ~ 7186959 (-)