AMCG00016836


Basic Information

Item Value
gene id AMCG00016836
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32025172 ~ 32034991 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016836
CAAGATGGAGgagagcagcagctgcaggagaacAATGTTTGGGCTTTAAAGACTCAAAGGAACGAGTGAGAAAAAATACACCGTAGAGAGCCAGCGGCGGCCATGCACAGGATATTTACTGTTGGTTCCAGTTAGTTTCTTGCCCCACAATCACCATGAGTATTATTCAAGACAAGCTTGGCAACGAGTTCCTGCGGAACGGCGGCATGGAGCCCAACTTCCCGCCGGGCATGATCATGTTCAGCCACCTCCCACCAGTGACCAGCTTCACCCGCATCGCAGCCCAGTCCGTCATGCAGGACATACCTCAGGAGATGATCCTCAAGAAAGAGCGGGACTCCCCGGACCGGACGGCGGACTTCATTCACACCATGGGCATTAAGCAGGAGAAGATGACCGAGCACGACTACAGACTGCCCCTCTATGGGAGCTCGGGGAAGAACGCCGACCTCCTTGAAGTGTCCCTGGGAAACCAAAACTTACTAGTGCACGACCTGAGCCTGAACAGAGATTCTATGATGCTGGATGGAGATGGAGGCAGTCTCTCTCCCAACTCAAAGCCTCATATCTGTGAGCATTGCAATGCTGCGTTCAGAAGCTCCTACCACTTGCGAAGACATGTGCTTATCCATACAGGAGAGCGGCCTTTCAGATGCAGCCAGTGTAACATGAGCTTCATCCAGAAGTATCTTCTGCAGCGGCATGAAAAGATTCATAGCGGAGAGAAGCCCTTCAGTTGTGATCAGTGTAATATGAGGTTCATTCAGAAGTATCACATGGAGCGGCACAAGAGGACACACAGCGGGGAAAAGCCATATAAATGTGACACCTGTCAGCAGTACTTTTCCAGGACGGATCGATTACTAAAGCACAAAAGAACCTGTGGAGAAGCCATAAAGAAAGGAATGGAGCCTGGAACGTCTGACCAAGGGGGTGGAGAGCTGGGACAAGGCAGCTACGTACTCACTCAGGGAAACACAAGTGCTTCCGGACGCAAGAAGGGCAAATCCAAAAACTCTTCAGGCGAGGCCAGTGagcggaagaagaagaaagcgAGCGACACGCAGATGCCAAGTAACCTTAACCTGCAGGACTATGCGGTGGAAATTCCCATTGTGTCTTCGAGTAACAATCTGCCGGGCACCAGTATGCACAGCCAGCATACCCGAGCACCTAAGCTGGTCTTCAAGAAGGTGAACCGGAAAGGCCTGGATAAGAATGAGCTATCTATGGCAGATTCCTCGGCTGACCTGGTGAGTCAGAAGCTGCTGTCAGATAAAGCAGGGTCATTGGACCTGGCTGGCGGCTCGGCGATGGATGGCATGGGACTTCTGCAAGGCTCGGGCTCCAAGCAGGGCCCGAGCAACAGCAGCAACTATGACGACGCCATGCAGTTCTTGAAGAAACGGCGCTACTTGCAGGCGGCCAACAATGGCACAGAATACGGTGTGAGTGTTGGCCACATGTCCTCTCAGCAGACTGTGATTCAGGGCGTAGTGACTGGGGTCATGGACAGTGATGCCCCGCTCAACCTGCTCGACTCCTCTCCCATGAACGTGGACATCAAGCACGACAAGTCCGGCATCCCTGACGAGGTCCTGCAGAGCCTCCTGGACCACTACTCCCAAAAACCCGACGGCCCCCACCATGAGGTGCCCTTCGATATCACTGACCAGCATGTGGACATCCACCCTCCAGGGGACAACTCTGACATTGGCCCCGAGGACGCCGTCTGCTCGAACTCGCCTTCCTCCTCTGGGGACAAGGCTGTCATCATGCATGAGTACTCTAAGTTCCTCCTGCAAGCTCTGGAGAGGACCAGCCACAACAGCAGCTTCCCCCTAGGCCCCGGTGGCCCATTTGCCAGCCTCTCGTCCAGCACGCATCCCAGCAACACCCTGTTCTCCGACAAGCACGTCTACACTACGCCCACCCTGGAGTGCGGCTTCAGCCAGTCCGTTACCTCAGTGTTGCCTGCCACCTTGCCAAAGTCCCATTTCGGGATGTTGGTCGGCTCCTCGCAGCCCAGCTTCCACTTGAGCAGCCTGGAGGCCGCCCATCAGCAGCTCACCCCGTCTCAGGAGCTCACTGACCAGATcgagcagcagcagaagaatCTCGAGCACTCCCCCACCTACCAGATCACACCTCAGGAGCTGGGCGGCCCAAAAGATCAGGCCAAAAACCCTCCATCCAGCTACCAGCTGACCCCCCAGGACCTGGCCTCTCAGATCGACCACTCCAAAGGGGTGGATCTCCGAGCGACATACCAGATCGAGAACTTCGCCCAGGCGTTCGGGTCTCAGTTTAAGTCAGGTAGCAGAGTGCCACTGGCTTTCAGCACTAACTCTAGTGGAGAAGTCGACCACAGAATAAGGACTCCGGTGTCAGAATTCTCAGGGTATACTAGTTTGTTGGCTGATGTTAATGAGCCAGTTAGTACAGGAGCAAAGACCCCAACAAGCCAAAGTTACAGGTAAGGTCTTGTGTGTGACTTAGTTggaggtttgtgttttgttttgttttttagttttgtttttttcttcctgttttttttccaagtaaggttatattttaattacactgcCATTAGAATGTTTATACAGGAGTGGTTCATGTGACATCCTTCCaatgcaatttttatttttattttttttaattgtcttctGTCAGTTTTATTCATATTAGTGTAATAATGTTAGGTCAGATCGTATAAAGAATTTTAAGCAAAAATAGGGTAGCTAAGGACTggcttaattatttttccatgaaCCTATGAGTTTTAGCAATCAACTttacaattgttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016836 True 2839 mRNA 0.51 6 32025172 32034991

Neighbor

gene id symbol gene type direction distance location
AMCG00016827 tmem98 coding upstream 247714 31770926 ~ 31777458 (+)
AMCG00016832 NA coding upstream 323546 31700472 ~ 31701626 (+)
AMCG00016828 NA coding upstream 330421 31687002 ~ 31694751 (+)
AMCG00016825 NA coding upstream 388127 31635059 ~ 31637045 (+)
AMCG00016821 NA coding upstream 390410 31611617 ~ 31634762 (+)
AMCG00016845 NA coding downstream 39760 32074751 ~ 32084572 (+)
AMCG00016844 NA coding downstream 55043 32090034 ~ 32139763 (+)
AMCG00016842 mpp3,LOC100693772 coding downstream 136881 32171872 ~ 32196229 (+)
AMCG00016839 naglu coding downstream 163957 32198948 ~ 32206874 (+)
AMCG00016840 NA coding downstream 175150 32210141 ~ 32216323 (+)
G16037 NA non-coding upstream 269745 31755042 ~ 31755427 (+)
G15995 NA non-coding upstream 380657 31615220 ~ 31644515 (+)
G15966 NA non-coding upstream 520620 31504079 ~ 31504552 (+)
G15961 NA non-coding upstream 548954 31475307 ~ 31476218 (+)
G15853 NA non-coding upstream 991851 31033069 ~ 31033321 (+)
G16169 NA non-coding downstream 226720 32261711 ~ 32262672 (+)
G16211 NA non-coding downstream 403263 32438254 ~ 32442585 (+)
G16290 NA non-coding downstream 822560 32857551 ~ 32859016 (+)
G16323 NA non-coding downstream 946788 32981779 ~ 32982330 (+)
G16350 NA non-coding downstream 1144714 33179705 ~ 33179940 (+)
AMCG00016830 NA other upstream 274059 31728556 ~ 31751113 (+)
AMCG00016829 NA other upstream 293726 31701669 ~ 31731446 (+)
AMCG00016820 NA other upstream 532068 31473706 ~ 31493104 (+)
G15855 LOC105013322 other upstream 964027 31059340 ~ 31061145 (+)
G15659 NA other upstream 1788331 30236454 ~ 30236841 (+)
AMCG00016841 NA other downstream 216817 32251808 ~ 32260627 (+)
AMCG00016854 NA other downstream 464065 32499056 ~ 32503372 (+)
G16289 NA other downstream 821370 32856361 ~ 32857440 (+)
AMCG00016880 dcaf7,LOC100702343,LOC105030232,LOC105898766 other downstream 1285153 33320144 ~ 33333746 (+)
AMCG00016898 NA other downstream 1595021 33630012 ~ 33650080 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004604 znf281b coding NC_007123.7 CM002896.2 16087077 ~ 16102422 (+)
grasscarp (Ctenopharyngodon idella) CI01000063_00452557_00462052 ZNF281B coding CI01000063 null 452557 ~ 462150 (+)