RNA id: AMCG00016836


Basic Information

Item Value
RNA id AMCG00016836
length 2839
RNA type mRNA
GC content 0.51
exon number 6
gene id AMCG00016836
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32025172 ~ 32034991 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGATGGAGgagagcagcagctgcaggagaacAATGTTTGGGCTTTAAAGACTCAAAGGAACGAGTGAGAAAAAATACACCGTAGAGAGCCAGCGGCGGCCATGCACAGGATATTTACTGTTGGTTCCAGTTAGTTTCTTGCCCCACAATCACCATGAGTATTATTCAAGACAAGCTTGGCAACGAGTTCCTGCGGAACGGCGGCATGGAGCCCAACTTCCCGCCGGGCATGATCATGTTCAGCCACCTCCCACCAGTGACCAGCTTCACCCGCATCGCAGCCCAGTCCGTCATGCAGGACATACCTCAGGAGATGATCCTCAAGAAAGAGCGGGACTCCCCGGACCGGACGGCGGACTTCATTCACACCATGGGCATTAAGCAGGAGAAGATGACCGAGCACGACTACAGACTGCCCCTCTATGGGAGCTCGGGGAAGAACGCCGACCTCCTTGAAGTGTCCCTGGGAAACCAAAACTTACTAGTGCACGACCTGAGCCTGAACAGAGATTCTATGATGCTGGATGGAGATGGAGGCAGTCTCTCTCCCAACTCAAAGCCTCATATCTGTGAGCATTGCAATGCTGCGTTCAGAAGCTCCTACCACTTGCGAAGACATGTGCTTATCCATACAGGAGAGCGGCCTTTCAGATGCAGCCAGTGTAACATGAGCTTCATCCAGAAGTATCTTCTGCAGCGGCATGAAAAGATTCATAGCGGAGAGAAGCCCTTCAGTTGTGATCAGTGTAATATGAGGTTCATTCAGAAGTATCACATGGAGCGGCACAAGAGGACACACAGCGGGGAAAAGCCATATAAATGTGACACCTGTCAGCAGTACTTTTCCAGGACGGATCGATTACTAAAGCACAAAAGAACCTGTGGAGAAGCCATAAAGAAAGGAATGGAGCCTGGAACGTCTGACCAAGGGGGTGGAGAGCTGGGACAAGGCAGCTACGTACTCACTCAGGGAAACACAAGTGCTTCCGGACGCAAGAAGGGCAAATCCAAAAACTCTTCAGGCGAGGCCAGTGagcggaagaagaagaaagcgAGCGACACGCAGATGCCAAGTAACCTTAACCTGCAGGACTATGCGGTGGAAATTCCCATTGTGTCTTCGAGTAACAATCTGCCGGGCACCAGTATGCACAGCCAGCATACCCGAGCACCTAAGCTGGTCTTCAAGAAGGTGAACCGGAAAGGCCTGGATAAGAATGAGCTATCTATGGCAGATTCCTCGGCTGACCTGGTGAGTCAGAAGCTGCTGTCAGATAAAGCAGGGTCATTGGACCTGGCTGGCGGCTCGGCGATGGATGGCATGGGACTTCTGCAAGGCTCGGGCTCCAAGCAGGGCCCGAGCAACAGCAGCAACTATGACGACGCCATGCAGTTCTTGAAGAAACGGCGCTACTTGCAGGCGGCCAACAATGGCACAGAATACGGTGTGAGTGTTGGCCACATGTCCTCTCAGCAGACTGTGATTCAGGGCGTAGTGACTGGGGTCATGGACAGTGATGCCCCGCTCAACCTGCTCGACTCCTCTCCCATGAACGTGGACATCAAGCACGACAAGTCCGGCATCCCTGACGAGGTCCTGCAGAGCCTCCTGGACCACTACTCCCAAAAACCCGACGGCCCCCACCATGAGGTGCCCTTCGATATCACTGACCAGCATGTGGACATCCACCCTCCAGGGGACAACTCTGACATTGGCCCCGAGGACGCCGTCTGCTCGAACTCGCCTTCCTCCTCTGGGGACAAGGCTGTCATCATGCATGAGTACTCTAAGTTCCTCCTGCAAGCTCTGGAGAGGACCAGCCACAACAGCAGCTTCCCCCTAGGCCCCGGTGGCCCATTTGCCAGCCTCTCGTCCAGCACGCATCCCAGCAACACCCTGTTCTCCGACAAGCACGTCTACACTACGCCCACCCTGGAGTGCGGCTTCAGCCAGTCCGTTACCTCAGTGTTGCCTGCCACCTTGCCAAAGTCCCATTTCGGGATGTTGGTCGGCTCCTCGCAGCCCAGCTTCCACTTGAGCAGCCTGGAGGCCGCCCATCAGCAGCTCACCCCGTCTCAGGAGCTCACTGACCAGATcgagcagcagcagaagaatCTCGAGCACTCCCCCACCTACCAGATCACACCTCAGGAGCTGGGCGGCCCAAAAGATCAGGCCAAAAACCCTCCATCCAGCTACCAGCTGACCCCCCAGGACCTGGCCTCTCAGATCGACCACTCCAAAGGGGTGGATCTCCGAGCGACATACCAGATCGAGAACTTCGCCCAGGCGTTCGGGTCTCAGTTTAAGTCAGGTAGCAGAGTGCCACTGGCTTTCAGCACTAACTCTAGTGGAGAAGTCGACCACAGAATAAGGACTCCGGTGTCAGAATTCTCAGGGTATACTAGTTTGTTGGCTGATGTTAATGAGCCAGTTAGTACAGGAGCAAAGACCCCAACAAGCCAAAGTTACAGGTAAGGTCTTGTGTGTGACTTAGTTggaggtttgtgttttgttttgttttttagttttgtttttttcttcctgttttttttccaagtaaggttatattttaattacactgcCATTAGAATGTTTATACAGGAGTGGTTCATGTGACATCCTTCCaatgcaatttttatttttattttttttaattgtcttctGTCAGTTTTATTCATATTAGTGTAATAATGTTAGGTCAGATCGTATAAAGAATTTTAAGCAAAAATAGGGTAGCTAAGGACTggcttaattatttttccatgaaCCTATGAGTTTTAGCAATCAACTttacaattgttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19924 lncRNA upstream 269745 31755042 ~ 31755427 (+) True G16037
TU19869 lncRNA upstream 380657 31615220 ~ 31644515 (+) True G15995
TU19822 lncRNA upstream 520620 31504079 ~ 31504552 (+) True G15966
TU19813 lncRNA upstream 543816 31479664 ~ 31481356 (+) True AMCG00016820
TU19814 lncRNA upstream 548954 31475307 ~ 31476218 (+) True G15961
TU20089 lncRNA downstream 216823 32251814 ~ 32253229 (+) False AMCG00016841
TU20094 lncRNA downstream 226720 32261711 ~ 32262672 (+) True G16169
TU20144 lncRNA downstream 403263 32438254 ~ 32442585 (+) True G16211
TU20241 lncRNA downstream 822560 32857551 ~ 32859016 (+) True G16290
TU20283 lncRNA downstream 946788 32981779 ~ 32982330 (+) True G16323
AMCG00016827 mRNA upstream 247714 31770926 ~ 31777458 (+) True AMCG00016827
AMCG00016830 mRNA upstream 274059 31733960 ~ 31751113 (+) True AMCG00016830
AMCG00016829 mRNA upstream 293726 31701669 ~ 31731446 (+) False AMCG00016829
AMCG00016832 mRNA upstream 323546 31700472 ~ 31701626 (+) True AMCG00016832
AMCG00016828 mRNA upstream 330421 31687002 ~ 31694751 (+) True AMCG00016828
AMCG00016845 mRNA downstream 39760 32074751 ~ 32084572 (+) True AMCG00016845
AMCG00016844 mRNA downstream 55043 32090034 ~ 32139763 (+) True AMCG00016844
AMCG00016842 mRNA downstream 136881 32171872 ~ 32196229 (+) True AMCG00016842
AMCG00016839 mRNA downstream 163957 32198948 ~ 32206874 (+) True AMCG00016839
AMCG00016840 mRNA downstream 175150 32210141 ~ 32216323 (+) True AMCG00016840
TU19916 other upstream 290856 31728556 ~ 31734316 (+) False AMCG00016830
TU19913 other upstream 298155 31721939 ~ 31727017 (+) True AMCG00016829
TU19688 other upstream 964027 31059340 ~ 31061145 (+) True G15855
TU19453 other upstream 1788331 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 1911888 30109599 ~ 30113284 (+) True AMCG00016770
TU20166 other downstream 464065 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 464585 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other downstream 465805 32500796 ~ 32503256 (+) False AMCG00016854
TU20240 other downstream 821370 32856361 ~ 32857440 (+) True G16289
TU20517 other downstream 1633638 33668629 ~ 33672620 (+) True AMCG00016901

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00009139 True 4782 mRNA 0.44 7 NC_007123.7 16087077 ~ 16102422 (+)
grasscarp (Ctenopharyngodon idella) CI01000063_00452557_00462052.mRNA True 2843 mRNA 0.52 6 CI01000063 452557 ~ 462150 (+)