AMCG00016842 (mpp3,LOC100693772)


Basic Information

Item Value
gene id AMCG00016842
gene name mpp3,LOC100693772
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32171872 ~ 32196229 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016842
ATGTCTCGGGAAACTGACTCTGTGTCCTGTACAGGATTGCATGAGACGCTTGCCCTTCTCACCTCGCAACTCCGTCCCGATGCCAACCACAAAGAGGACATGGTCTTCCTGAAGGATGTGTTCAGCGAGAAGAGTCTGAGCTACCTGATGAAGATCCACGAGAAACTCCGCCAGTATGAGCGCCACAGCCCCACTCCCATCCTGCACAGCGCCTCATCCCTGGCCGAGGACGCTGTTCTCTCAGTCCATGACACAGTGGCCCAAAAGAACTTTGACCCTGTCCTCCCCCCACTGCCAGATGACTTTGAGGACGAACTGGAGGAGGAGTCAGTGAAGATCGTCCGCCTGGTCAAGAACAAGGAGCCCCTGGGGGCAACAATCCGGCGAGATGAGCACACGGGCGCTGTGATAGTAGCCAGGATCATGCGTGGGGGGGCTGCGGATCGGAGTGGGCTGGTTCACGTGGGAGATGAGCTGAGAGAAGTCAATGGAATCTCAATCATCCACAAAAGACCAGATGAAATCAGTCAGATTCTGTCGCAGTCTCAGGGGTCAATAACGCTGAAAATCATCCCAGCAATAAAGGAGGAGGACCGATTGAAGGAGAGCAAGGTATACATGAGGGCCCTGTTCGACTACATCCCCTCAGAGGATAAGGCCACACCCTGCCAGGAGGCGGGACTTCCCTTCAAGCGTGGCGACATCCTGCAGGTGGTGAGCCAGGACGACCCCACGTGGTGGCAGGCCAAGAGAGTGGGCGACAGCAACTTGCGCGCTGGCCTCATCCCCTCCAAACAGTTCCAGGAGAGACGTCTGGCCTACAGGATAAAAATGGGAACCCTGCAGAATCCCAAATCCCCCAAAAGGCCACTCTATGACCAGTCTTGTGACAAAGAGGACTGTGACTGTGAGGGCTATTTCAATGGACAGTACATAGCCGGCCTGCGCAGGAGCTTCCGCCTGAGCCGCAAGGACCGGCAGGGTGGCCAAGTGGAGGCACGGCAGCCAGACCCCGGCGAGCCGGAGTTCATCACCTACGAAGAGGTCACTCGCTACCAGCAGAGGCATCATGAGCGGCCCAGGCTGGTTGTCCTCATTGGATCACTGGGAGCTCGGATCAACGAGCTGAAACAGAAGGTCATCGCAGAGAACCCGCAGCGCTACGGAGTCGCAGTCCCACATACCACAAGACCCAAAAAAAGCCACGAGAAAGAGGGGGTGGAATATCACTTTGTCTCCAAGCAGATGTTTGAAGCAGACGCACAGAATAACAAGTTCATTGAGCACGGGGAGTACAAGGAAAACCAGTACGGCACCAGCCTGGAGGCCATTCGGTCAGTGCAGGCAAGGAATAAACTGTGCTTAGTGGATGTCCAGCCAGAGGCGTTGAAGAGCCTGCGCACCTCCGAGTTCAAGCCCTTCGTGATCTTCGTCAGGCCGCGCATTCCCGAAACCCGCCGCCGGCGCAGCGCAGCCTCTCCCGGGGCCGTGGACCACGGAAGGGTCACAGACGACGAGCTGCAGGAGATGCGTCAGTCAGCCGCCCTCATCGACCAGCAGTACGGCCACCTGGTGGACAGGGTGTTGGTCAAGGAGGACACACAGAGCGCCTGCGCCGAGCTCAAGAGCATCCTGGAGCGGCTGGAGCGGGAGGCTTTTTGGGTGCCCATCAGCTGGGTGCGGACCTAGCCCACTGCCAACACCCCACGCCCCAACGTCCCTTCCACCATCCCCAACCCCAAATCTGTACAGGAGTCCCTTTGGGCCTCACCTCCAACTGGTACTGTAGAACTGTGACCAACAGAAAAGCTGCTGTCCAATCACAGACACGCTGCCAGTTCTGGGTAACTAGAGCAGAAGAGACGCCTTGCAAAACAGCGAAGGGAAGTCTTGGAGTCAGGATATGGAGAAAGCAGGGTTAGATCCAGATAAGCATCCTCTTTCTCACAGCCACCTCTTCAGTTGGCAAGCAATTCTATGCACTCCAGGTTTATCTTCATGCACCCATGTCCTCTTTAGCCCTCTGAAAGTTTGTGCGCTCCCTTTTGATTTAGGAACAGTTGAGAGTCGAAACCCGTCAGCTTGGGGTTTCAACACTGCTGTTTTACGGCTGAAGACAGATGTTTAAAGGCAATCAATCAAAATTAAGGATCGATGGTGTGGTTTCCTAATCAGTGTTATAAAACCTTCCCCTATATTCAAGTAAATATGTATTCTACAGGTACAAAGTGTTGGAATAAGCCATGATGAACTATTTCTCCCTCCTTTATGATTGCAGAAAGGGCCAATAAAAAGGAATTTGTTATAATAACCCAACCATCCCAGTTTGAACCCACTgtaacacataaataaaatactgtaaatatctATGTTATATTTAGGAAACTCTAATAAGGGGttggaagaaaaaactaaatccagTAGACTATGAACAGTCAACCActgtgctatttttaaatgtaggttTTTGGAAAACCTTCCtgttaaactaaataaaatatatagaaaatccAGTCATGCAGAACAGCATTTCACAAGTTCCCATAATTCCTTGTCAGAGGGTATAGAAACTGAGGTATTGTGGGCAAGACTGACTGCATATCCATCTAAGTGGTCGTGGTGACATCCTACACGGTCCTTTTTAATTTGGATTCTCAGGGGTCTGACATGGGTAGAGCCAGACGGATCATTAGCACAGGCCTGGTGCGGTTTTATGGCTCTTCTATTCAAGCACCTCTCCAGTTCTTCTGTTCTGATGGATTTCTTTCAGTTCCAGATCTCGGACAAGCTCTGAGAGAGAGCATTAATGAGCAATAGCCAACAGtggtttctgtattttgttgagTATTcaggaaaaattaaaatgtctagaCAGCATCCTCATGGTATAAGacttttgcacttttaaaacgGATTTATCATACTTTTGCTGCCATTTCCTATAGGGTTctttactgtgttttacaaTTGGACCATTAAGTGAAATATGGTGGAATATCATGGCATTCCCTTGGTAGAGTGCCATAAAATATTCAAGGCATGTTCAGCCCATAGGAAATCACTGTAAATCTATGTGGAAACCCCCCAGTAAAACCAGGTTAAAAGTGCAAAACTCCTATTGTGCATTTAACAAGGTAAACTTGCATGAGGGCCACTAACATAAATGAAATGCTCACAGATTTGTAGATAccgttgtgtgtgtgagagagagagagagggagagggagagggagaacaattgatttgttttcctcaggAGGAGGTTTTGGTTTTtatgaaacacatttgtatattgACACATCATGAATCACCCTTTAGCTTGATTTTTCCAGAacaattgcaaataaataaataaataaaaacagcctgCAAGCTGCTCGGCAGGAATAGATTATTCTGTGGTTAACAAAACGCATCATAACCTTCTGTtccaatttcaatttaaaccaAGGGTACAATGTACAGCAGAAATACAGCAAATGAGCATTAAAATTGCAGTATATCTACAACACTAAGAAACTGTGTTCTATGACTCCTTTAGTATTCCCTATTGCTTGTCAGGATCAAAGATAAACCTCAGTGTGTAggcttcacacacacatgcagaattGCTCTGAGAAGAACATGAGCCGCTTGATATTTGGATCCGCAGCTCACATATGTATAAAACCATATTTTAACTTTGCTCAAAATAGCCCGGGAGCACAAGGGAGAGAAATACTTCACTATCTGACATTGCAGGCTCAGTTCTGTGAGTCCTCGCTGTGTCCGTTTGTCTTGCACACCATCTGAACTTGAAAAGAGAGATACTCAACCATGGTGCTTCCTCACCTCCTGCAGGGATAAAGGCAAGAGTAAAAAAACAGACTCCCAGGTGCATGAACAAGAATGCACAATCCTACTGTGTTTGATTATAGAAAACAATGCAGTATTAGGCAGTATTAAATCATGTCCAGGGAAGCTTTTGTCTAACCTGATACCACAGGGTTCCCCCATCCTTACTGTTCTGTATagaaaatctttattttattttattttattttctagacCTGTGTACCCTGTACAGTGAAGTTCATAACATCCAGTCGCATCTCAAAGACTCACTCGTCACAACTTGTAATCCATGCTCAAGCTTTTTCATATAGAGAaaacttaatacaaaaaaaaactgactaTGACCCTCCCTTTGGTCGAATTGGATGTTTACAGTTTCTCTCTCACAAGTCGAAAAAAGAGGCAAGACTCGTTCTGACCCCTTGCGTTTGAACGTTACACGTGTGCGAATGTGACGCTAAGAAGCCTCTGGATTCTTGACCTTTGAACTGATCTTGTGCTGTTAGAATAACAAGtcaacaaagttttttttttttattgatttatttgtaaatttgtaaacTTGTACTTTAGCTTGTAAACCGATCTTCCGTGTGGAATTTGTAAAGTGAGTTAAAGAACTGCAGTAGTAAAACATTGGTG

Function

symbol description
mpp3 Predicted to enable PDZ domain binding activity.

NR:

description
PREDICTED: MAGUK p55 subfamily member 3

GO: NA

KEGG:

id description
K24049 MPP3_7; MAGUK p55 subfamily member 3/7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016842 True 4476 mRNA 0.47 16 32171872 32196229

Neighbor

gene id symbol gene type direction distance location
AMCG00016844 NA coding upstream 32109 32090034 ~ 32139763 (+)
AMCG00016845 NA coding upstream 87300 32074751 ~ 32084572 (+)
AMCG00016836 NA coding upstream 136881 32025172 ~ 32034991 (+)
AMCG00016827 tmem98 coding upstream 394414 31770926 ~ 31777458 (+)
AMCG00016832 NA coding upstream 470246 31700472 ~ 31701626 (+)
AMCG00016839 naglu coding downstream 2719 32198948 ~ 32206874 (+)
AMCG00016840 NA coding downstream 13912 32210141 ~ 32216323 (+)
AMCG00016843 NA coding downstream 29563 32225792 ~ 32245535 (+)
AMCG00016848 tubg1,LOC106601139,LOC107721485 coding downstream 88527 32284756 ~ 32303469 (+)
AMCG00016851 NA coding downstream 197652 32393881 ~ 32434138 (+)
G16037 NA non-coding upstream 416445 31755042 ~ 31755427 (+)
G15995 NA non-coding upstream 527357 31615220 ~ 31644515 (+)
G15966 NA non-coding upstream 667320 31504079 ~ 31504552 (+)
G15961 NA non-coding upstream 695654 31475307 ~ 31476218 (+)
G15853 NA non-coding upstream 1138551 31033069 ~ 31033321 (+)
G16169 NA non-coding downstream 65482 32261711 ~ 32262672 (+)
G16211 NA non-coding downstream 242025 32438254 ~ 32442585 (+)
G16290 NA non-coding downstream 661322 32857551 ~ 32859016 (+)
G16323 NA non-coding downstream 785550 32981779 ~ 32982330 (+)
G16350 NA non-coding downstream 983476 33179705 ~ 33179940 (+)
AMCG00016830 NA other upstream 420759 31728556 ~ 31751113 (+)
AMCG00016829 NA other upstream 440426 31701669 ~ 31731446 (+)
AMCG00016820 NA other upstream 678768 31473706 ~ 31493104 (+)
G15855 LOC105013322 other upstream 1110727 31059340 ~ 31061145 (+)
G15659 NA other upstream 1935031 30236454 ~ 30236841 (+)
AMCG00016841 NA other downstream 55579 32251808 ~ 32260627 (+)
AMCG00016854 NA other downstream 302827 32499056 ~ 32503372 (+)
G16289 NA other downstream 660132 32856361 ~ 32857440 (+)
AMCG00016880 dcaf7,LOC100702343,LOC105030232,LOC105898766 other downstream 1123915 33320144 ~ 33333746 (+)
AMCG00016898 NA other downstream 1433783 33630012 ~ 33650080 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location