RNA id: AMCG00016842


Basic Information

Item Value
RNA id AMCG00016842
length 4476
RNA type mRNA
GC content 0.47
exon number 16
gene id AMCG00016842
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32171872 ~ 32196229 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTCGGGAAACTGACTCTGTGTCCTGTACAGGATTGCATGAGACGCTTGCCCTTCTCACCTCGCAACTCCGTCCCGATGCCAACCACAAAGAGGACATGGTCTTCCTGAAGGATGTGTTCAGCGAGAAGAGTCTGAGCTACCTGATGAAGATCCACGAGAAACTCCGCCAGTATGAGCGCCACAGCCCCACTCCCATCCTGCACAGCGCCTCATCCCTGGCCGAGGACGCTGTTCTCTCAGTCCATGACACAGTGGCCCAAAAGAACTTTGACCCTGTCCTCCCCCCACTGCCAGATGACTTTGAGGACGAACTGGAGGAGGAGTCAGTGAAGATCGTCCGCCTGGTCAAGAACAAGGAGCCCCTGGGGGCAACAATCCGGCGAGATGAGCACACGGGCGCTGTGATAGTAGCCAGGATCATGCGTGGGGGGGCTGCGGATCGGAGTGGGCTGGTTCACGTGGGAGATGAGCTGAGAGAAGTCAATGGAATCTCAATCATCCACAAAAGACCAGATGAAATCAGTCAGATTCTGTCGCAGTCTCAGGGGTCAATAACGCTGAAAATCATCCCAGCAATAAAGGAGGAGGACCGATTGAAGGAGAGCAAGGTATACATGAGGGCCCTGTTCGACTACATCCCCTCAGAGGATAAGGCCACACCCTGCCAGGAGGCGGGACTTCCCTTCAAGCGTGGCGACATCCTGCAGGTGGTGAGCCAGGACGACCCCACGTGGTGGCAGGCCAAGAGAGTGGGCGACAGCAACTTGCGCGCTGGCCTCATCCCCTCCAAACAGTTCCAGGAGAGACGTCTGGCCTACAGGATAAAAATGGGAACCCTGCAGAATCCCAAATCCCCCAAAAGGCCACTCTATGACCAGTCTTGTGACAAAGAGGACTGTGACTGTGAGGGCTATTTCAATGGACAGTACATAGCCGGCCTGCGCAGGAGCTTCCGCCTGAGCCGCAAGGACCGGCAGGGTGGCCAAGTGGAGGCACGGCAGCCAGACCCCGGCGAGCCGGAGTTCATCACCTACGAAGAGGTCACTCGCTACCAGCAGAGGCATCATGAGCGGCCCAGGCTGGTTGTCCTCATTGGATCACTGGGAGCTCGGATCAACGAGCTGAAACAGAAGGTCATCGCAGAGAACCCGCAGCGCTACGGAGTCGCAGTCCCACATACCACAAGACCCAAAAAAAGCCACGAGAAAGAGGGGGTGGAATATCACTTTGTCTCCAAGCAGATGTTTGAAGCAGACGCACAGAATAACAAGTTCATTGAGCACGGGGAGTACAAGGAAAACCAGTACGGCACCAGCCTGGAGGCCATTCGGTCAGTGCAGGCAAGGAATAAACTGTGCTTAGTGGATGTCCAGCCAGAGGCGTTGAAGAGCCTGCGCACCTCCGAGTTCAAGCCCTTCGTGATCTTCGTCAGGCCGCGCATTCCCGAAACCCGCCGCCGGCGCAGCGCAGCCTCTCCCGGGGCCGTGGACCACGGAAGGGTCACAGACGACGAGCTGCAGGAGATGCGTCAGTCAGCCGCCCTCATCGACCAGCAGTACGGCCACCTGGTGGACAGGGTGTTGGTCAAGGAGGACACACAGAGCGCCTGCGCCGAGCTCAAGAGCATCCTGGAGCGGCTGGAGCGGGAGGCTTTTTGGGTGCCCATCAGCTGGGTGCGGACCTAGCCCACTGCCAACACCCCACGCCCCAACGTCCCTTCCACCATCCCCAACCCCAAATCTGTACAGGAGTCCCTTTGGGCCTCACCTCCAACTGGTACTGTAGAACTGTGACCAACAGAAAAGCTGCTGTCCAATCACAGACACGCTGCCAGTTCTGGGTAACTAGAGCAGAAGAGACGCCTTGCAAAACAGCGAAGGGAAGTCTTGGAGTCAGGATATGGAGAAAGCAGGGTTAGATCCAGATAAGCATCCTCTTTCTCACAGCCACCTCTTCAGTTGGCAAGCAATTCTATGCACTCCAGGTTTATCTTCATGCACCCATGTCCTCTTTAGCCCTCTGAAAGTTTGTGCGCTCCCTTTTGATTTAGGAACAGTTGAGAGTCGAAACCCGTCAGCTTGGGGTTTCAACACTGCTGTTTTACGGCTGAAGACAGATGTTTAAAGGCAATCAATCAAAATTAAGGATCGATGGTGTGGTTTCCTAATCAGTGTTATAAAACCTTCCCCTATATTCAAGTAAATATGTATTCTACAGGTACAAAGTGTTGGAATAAGCCATGATGAACTATTTCTCCCTCCTTTATGATTGCAGAAAGGGCCAATAAAAAGGAATTTGTTATAATAACCCAACCATCCCAGTTTGAACCCACTgtaacacataaataaaatactgtaaatatctATGTTATATTTAGGAAACTCTAATAAGGGGttggaagaaaaaactaaatccagTAGACTATGAACAGTCAACCActgtgctatttttaaatgtaggttTTTGGAAAACCTTCCtgttaaactaaataaaatatatagaaaatccAGTCATGCAGAACAGCATTTCACAAGTTCCCATAATTCCTTGTCAGAGGGTATAGAAACTGAGGTATTGTGGGCAAGACTGACTGCATATCCATCTAAGTGGTCGTGGTGACATCCTACACGGTCCTTTTTAATTTGGATTCTCAGGGGTCTGACATGGGTAGAGCCAGACGGATCATTAGCACAGGCCTGGTGCGGTTTTATGGCTCTTCTATTCAAGCACCTCTCCAGTTCTTCTGTTCTGATGGATTTCTTTCAGTTCCAGATCTCGGACAAGCTCTGAGAGAGAGCATTAATGAGCAATAGCCAACAGtggtttctgtattttgttgagTATTcaggaaaaattaaaatgtctagaCAGCATCCTCATGGTATAAGacttttgcacttttaaaacgGATTTATCATACTTTTGCTGCCATTTCCTATAGGGTTctttactgtgttttacaaTTGGACCATTAAGTGAAATATGGTGGAATATCATGGCATTCCCTTGGTAGAGTGCCATAAAATATTCAAGGCATGTTCAGCCCATAGGAAATCACTGTAAATCTATGTGGAAACCCCCCAGTAAAACCAGGTTAAAAGTGCAAAACTCCTATTGTGCATTTAACAAGGTAAACTTGCATGAGGGCCACTAACATAAATGAAATGCTCACAGATTTGTAGATAccgttgtgtgtgtgagagagagagagagggagagggagagggagaacaattgatttgttttcctcaggAGGAGGTTTTGGTTTTtatgaaacacatttgtatattgACACATCATGAATCACCCTTTAGCTTGATTTTTCCAGAacaattgcaaataaataaataaataaaaacagcctgCAAGCTGCTCGGCAGGAATAGATTATTCTGTGGTTAACAAAACGCATCATAACCTTCTGTtccaatttcaatttaaaccaAGGGTACAATGTACAGCAGAAATACAGCAAATGAGCATTAAAATTGCAGTATATCTACAACACTAAGAAACTGTGTTCTATGACTCCTTTAGTATTCCCTATTGCTTGTCAGGATCAAAGATAAACCTCAGTGTGTAggcttcacacacacatgcagaattGCTCTGAGAAGAACATGAGCCGCTTGATATTTGGATCCGCAGCTCACATATGTATAAAACCATATTTTAACTTTGCTCAAAATAGCCCGGGAGCACAAGGGAGAGAAATACTTCACTATCTGACATTGCAGGCTCAGTTCTGTGAGTCCTCGCTGTGTCCGTTTGTCTTGCACACCATCTGAACTTGAAAAGAGAGATACTCAACCATGGTGCTTCCTCACCTCCTGCAGGGATAAAGGCAAGAGTAAAAAAACAGACTCCCAGGTGCATGAACAAGAATGCACAATCCTACTGTGTTTGATTATAGAAAACAATGCAGTATTAGGCAGTATTAAATCATGTCCAGGGAAGCTTTTGTCTAACCTGATACCACAGGGTTCCCCCATCCTTACTGTTCTGTATagaaaatctttattttattttattttattttctagacCTGTGTACCCTGTACAGTGAAGTTCATAACATCCAGTCGCATCTCAAAGACTCACTCGTCACAACTTGTAATCCATGCTCAAGCTTTTTCATATAGAGAaaacttaatacaaaaaaaaactgactaTGACCCTCCCTTTGGTCGAATTGGATGTTTACAGTTTCTCTCTCACAAGTCGAAAAAAGAGGCAAGACTCGTTCTGACCCCTTGCGTTTGAACGTTACACGTGTGCGAATGTGACGCTAAGAAGCCTCTGGATTCTTGACCTTTGAACTGATCTTGTGCTGTTAGAATAACAAGtcaacaaagttttttttttttattgatttatttgtaaatttgtaaacTTGTACTTTAGCTTGTAAACCGATCTTCCGTGTGGAATTTGTAAAGTGAGTTAAAGAACTGCAGTAGTAAAACATTGGTG

Function

GO: NA

KEGG:

id description
K24049 MPP3_7; MAGUK p55 subfamily member 3/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19924 lncRNA upstream 416445 31755042 ~ 31755427 (+) True G16037
TU19869 lncRNA upstream 527357 31615220 ~ 31644515 (+) True G15995
TU19822 lncRNA upstream 667320 31504079 ~ 31504552 (+) True G15966
TU19813 lncRNA upstream 690516 31479664 ~ 31481356 (+) True AMCG00016820
TU19814 lncRNA upstream 695654 31475307 ~ 31476218 (+) True G15961
TU20089 lncRNA downstream 55585 32251814 ~ 32253229 (+) False AMCG00016841
TU20094 lncRNA downstream 65482 32261711 ~ 32262672 (+) True G16169
TU20144 lncRNA downstream 242025 32438254 ~ 32442585 (+) True G16211
TU20241 lncRNA downstream 661322 32857551 ~ 32859016 (+) True G16290
TU20283 lncRNA downstream 785550 32981779 ~ 32982330 (+) True G16323
AMCG00016844 mRNA upstream 32109 32090034 ~ 32139763 (+) True AMCG00016844
AMCG00016845 mRNA upstream 87300 32074751 ~ 32084572 (+) True AMCG00016845
AMCG00016836 mRNA upstream 136881 32025172 ~ 32034991 (+) True AMCG00016836
AMCG00016827 mRNA upstream 394414 31770926 ~ 31777458 (+) True AMCG00016827
AMCG00016830 mRNA upstream 420759 31733960 ~ 31751113 (+) True AMCG00016830
AMCG00016839 mRNA downstream 2719 32198948 ~ 32206874 (+) True AMCG00016839
AMCG00016840 mRNA downstream 13912 32210141 ~ 32216323 (+) True AMCG00016840
AMCG00016843 mRNA downstream 29563 32225792 ~ 32245535 (+) True AMCG00016843
AMCG00016841 mRNA downstream 55579 32251808 ~ 32260627 (+) True AMCG00016841
AMCG00016848 mRNA downstream 88527 32284756 ~ 32303469 (+) True AMCG00016848
TU19916 other upstream 437556 31728556 ~ 31734316 (+) False AMCG00016830
TU19913 other upstream 444855 31721939 ~ 31727017 (+) True AMCG00016829
TU19688 other upstream 1110727 31059340 ~ 31061145 (+) True G15855
TU19453 other upstream 1935031 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 2058588 30109599 ~ 30113284 (+) True AMCG00016770
TU20166 other downstream 302827 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 303347 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other downstream 304567 32500796 ~ 32503256 (+) False AMCG00016854
TU20240 other downstream 660132 32856361 ~ 32857440 (+) True G16289
TU20517 other downstream 1472400 33668629 ~ 33672620 (+) True AMCG00016901

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051886 False 4845 mRNA 0.40 19 NC_007114.7 38647987 ~ 38692920 (-)
grasscarp (Ctenopharyngodon idella) CI01000063_00533801_00557577.mRNA False 1910 mRNA 0.49 16 CI01000063 533801 ~ 557706 (+)