RNA id: AMCG00016848


Basic Information

Item Value
RNA id AMCG00016848
length 4199
RNA type mRNA
GC content 0.47
exon number 11
gene id AMCG00016848
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32284756 ~ 32303469 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGATTTAGCGGTTTCGTAGTGTTGCTAAAGCGGGAGCCAGATCTGTTGACAGAAAACTGTATCCGATTTTCCGCTTCATTCAACCTGCAAAACACCTCGGGAAATCCACGAATGAACGAAGATGCCCCGAGAAATCATCACCCTTCAATTAGGACAGTGTGGCAACCAAATTGGCTTTGAGTTTTGGAAGCAGCTTTGTGCAGAGCATGGCATCAGCCCCGAGGGCATCGTGGAGGAGTTTGCCACAGAAGGCACTGACCGGAAAGATGTCTTTTTCTATCAGGCAGACGATGAGCACTATATCCCCAGGGCCGTGCTGCTAGACCTGGAGCCTAGAGTGATCCACTCCATCCTAAACTCACCCTACGCCAACCTGTACAACCCTGAAAACATCTACCTGTCAGAGCATGGAGGGGGAGCTGGCAATAACTGGGCTAGCGGCTTTTCTCAGGGTGAAAAAATCCATGAAGACATCTTTGACATTATCGATAGAGAGGCAGATGGAAGTGACAGTTTGGAGGGCTTTGTGCTGTGCCACTCCATTGCTGGGGGAACTGGTTCAGGTCTGGGCTCATACCTGCTGGAGAGACTCAATGACAGGTATCCCAAGAAACTGGTCCAGACCTattcagtgtttcccaaccaGGATGAGATGAGTGACGTTGTCGTGCAGCCATACAACTCCCTGCTGACCCTGAAAAGGCTGACTCAAAATGCAGACTGTGTGgtgGTGCTAGATAATACAGCTCTGAACCGCATAGCTACTGACAGACTGCACATTCAGAACCCCTCCTTCTCTCAGATTAACCAACTGGTCTCCACCATCATGTCTGCCAGCACTACCACCCTGCGCTACCCGGGCTACATGAACAACGACCTGATCGGGCTGATCGCGTCCCTCATCCCCACCCCCCGCCTCCACTTCCTAATGACTGGTTACACCCCGCTCACCACCGACCAATCGGTGGCCAGTGTCCGGAAAACCACCGTGTTGGACGTGATGAGGAGACTGCTGCAGCCCAAGAATGTCATGGTGTCCACCGGCAGGGACCGGCAGACCAACCACTGCTACATTGCCATCCTCAACATCATCCAGGGAGAGGTGGACCCCACACAGGTGCACAAAAGCCTGCAGAGGATCCGAGAGAGGAAGCTGGCCAGTTTCATCCCCTGGGGTCCTGCCAGTATCCAGGTGGCTCTGTCCCGGAAGTCTCCCTACCTGCCGTCAGCTCACCGTGTCAGTGGACTGATGATGGCGAACCACACCAGCATCTCCTCTCTGTTCGAGCGCACGTGCCGGCAGTATGACAAGCTGAGGAAGCGGGAGGCCTTCCTGGAGCAATTCCGCAAGGAGGATGTGTTCAAGGACAACTTCGATGAGCTGGACAACTCCAGAGAGGTGGTGCAGCAGCTCATCGACGAGTATGGCGCCGCCACCCGACCCGACTACATCTCCTGGGGGGCTCAGGAACAGtgacgccccccccccccgccttctctctttctcctctccatCTACCATGCCCCCCTCTCCCACTGTGGCATGTGAGCAAGGCAGCCTTTCCTTAGCTAGATCTCTGACTTGCAAAGAGACAGTCGCACCTCCCTTCACTTGGTGGTCAGCAGTGGATGTGGGACCTGAACCGTCCAGAGGGATGTAAAATACTCCTGTAGTCCAGTGGAAATGAATGATATCAGCAGATTAACACACAGTGAGATTTTCCCCATGTGGGGgcctgtttatttatgtttttattttttattgaatctCTTTAAAGGATCtgctcagatttgttttcctaaCCCTGTGTTTCCTATAGTTCCTATAGCTGAGAATCCAGAGTGCTCTGCCACCCTTCACTTATTAATATCATTTGACTATTGGGGGGGTCTTCTGCTAGACAACATGACTTCACATGCCCTTTCTTCTGTCTCGACCCGAAAAACCCGTTCCTTTCTGCAGCCACCCTGCCCTTCGTCTCTTCTGAGCTTCATCCTGCAACCATCCAGTGAGAGAAACCGAAACGCACGTCACAAGCAGGCCGTTGCTGGGCCGGTTTAAAACATGATCTGGTGGGAGATTGCAAACCAAATAACAGGGCAGAAAACGCTGTACTCATTGTTCACCAGTACGCCCCAGGCAGTCAGTAGATAAAAATAAGACTGAAGGGGGGTTAATGTCACACTTCCCCAAAGCGGCAAACAACgcatttcaaagtgttttgtttgtcaaatcGAAGTCTTACAGAATATACTTATTTAAAGTTTGTGTATTAAGCTAAGCTATACATTTATAGTACTGTCTTCAGATTTGTCATCTTGATCTTTGCACATGCATCTCAGCACTGTCAGTGCTCCCTCAACTTAATATATTTGTTCCCAGCACACCACGAAGCCTCCTGGATTCATTCAGGTAACTTGTGTAAATAGTtaaaaatgctacattttaaatactgcttTGAGTGTTTATTTTAGGAAAGAAAGCACAGAGAAGTCCTGTTCTCCAGCCTGTAGTTCAGGTGGCTCTGATGGAGAGAGCAAACCGTTCTTGgcaaatatggaaaatattcaAAGTGTCATGCAGGACTGCACGTGGAAGGTGAATAGGATCATATTGCGAGGGGTTCTGTAAGGGTGACACCTGCACATGGAAACTATTTTCCAGTGTAAGCAGAGTCTGAACTTTTATTTGTCCGAAGGCTGGAAAGGCTGTGTACATCTGTATACACACAGATGTACATGTAAACAGACACGCAGGCTCAGTCCTCACTCATCATACGTACCCGGTCTGGCCTGGCACTGAAATCAGCACTGGAGTTGGTATTGTACAGGGAAAGGTATAGAGTACTGTACCCTGCTGCAGAACTGGTCTGGATAGAAGACTGTAGATGATGAAGGGACATGAAGAGTGACAACCGGATGTGCGtgtctatacacacacacacacacacacacacacccctatgTAACATGGCTAGGTCACTGTAAGTTCCAGTTTGCACAGTGAAATGCACGTGATTTGGAAACTAATCCAGTGTATATAAAGTGTAATGTAAAAGTGCATTGTTCCCAATCCCACAGCAGTTGggcacatttcaaataaatagttttttctatTAATCAGCAGTGTGGTACGTGTGTGTTCGTACGTGTGTTAAAGCATGGCTCAGGCCCATGGTCATTGCTCAGCTCACGTAgttgtgaaaattaaattagatttctGGGAATTTCTCTGCTGGCTGCCGTTTCAATGGAGGTCACAGCTGCTTATGTAACAGACGAGCGTGCATCTGAATGTGCTTGTGTAGTAAATGTTATTCTTTAAGGATAATTGATGCAGTAGCTTTACAGTTTTCCCAGGCCTTGTCCGAAGCAGCGTCTCCCTGGAAGCTGAAAGGCCTGGTGGCTAGTGTAAGACTTTATTTCCATGGCTCAATTTGGGACTTTAGGTGTGAATATTTTGGATTCATGAATTATCCACCACCCTTTCAGAAAAGCCAGTGGCACTGGGAAcatcaaatttaattttatcGCTCCatgttatttatctttattaaataaagggtGATTCTTCCTCCCCTTGCAGTTTTAGTTTCAGAAATGACCTCCAAACAGGTCTTATTTGGTCGGCTTGTAGCTTCTGTGAACGGAAGCTGGTCTTTAAAACCCCTGGGAAGCCCCATGTGTAGGTGCTGTTTGTAGCTTTTCTTCCAGCTTTGGACCAAGCATGGAACTGCATTCAACCTACTGATCAGCTCCAGAACAATAAACTGCACTAGAATAAATAACAAGAAATGTGTCGGTTTTTATAGTCAGCTGTGTACAAATAGGGTCTTCAAATGGGTTTAATCTATGATTGCAGTTCAAGCTACTTAATTTGATCCTTGCCTTGCTCTGGTGGACTTGCAGATTCATAATGGCTCTAGAAGTGTGCTGGCTTTACCatatcattaatttattcagacTTGCCTTCTAAGAGTATTAATGATCTGTGTAGGGATATGCACCCATACATATCTCTTCTTTAaccttttgtattgtttaaatgttttttcacaaaTGTTCAACAAcccttttaaatgcaaatgtttcctGCTCTGCGTGTCTCCGCGGCAGCTGGTTGTGTAACTCACAGGCGTGTTCAAGTGTGTGCAGAGATCCCAGTGTGTCGGTAATAAatgacaacatttttaaaaata

Function

GO:

id name namespace
GO:0007020 microtubule nucleation biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0031122 cytoplasmic microtubule organization biological_process
GO:0000930 gamma-tubulin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K10389 TUBG; tubulin gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20094 lncRNA upstream 22084 32261711 ~ 32262672 (+) True G16169
TU20089 lncRNA upstream 31527 32251814 ~ 32253229 (+) False AMCG00016841
TU19924 lncRNA upstream 529329 31755042 ~ 31755427 (+) True G16037
TU19869 lncRNA upstream 640241 31615220 ~ 31644515 (+) True G15995
TU19822 lncRNA upstream 780204 31504079 ~ 31504552 (+) True G15966
TU20144 lncRNA downstream 134785 32438254 ~ 32442585 (+) True G16211
TU20241 lncRNA downstream 554082 32857551 ~ 32859016 (+) True G16290
TU20283 lncRNA downstream 678310 32981779 ~ 32982330 (+) True G16323
TU20320 lncRNA downstream 876236 33179705 ~ 33179940 (+) True G16350
TU20321 lncRNA downstream 876770 33180239 ~ 33180439 (+) True G16351
AMCG00016841 mRNA upstream 24129 32251808 ~ 32260627 (+) True AMCG00016841
AMCG00016843 mRNA upstream 39221 32225792 ~ 32245535 (+) True AMCG00016843
AMCG00016840 mRNA upstream 68433 32210141 ~ 32216323 (+) True AMCG00016840
AMCG00016839 mRNA upstream 77882 32198948 ~ 32206874 (+) True AMCG00016839
AMCG00016842 mRNA upstream 88527 32171872 ~ 32196229 (+) True AMCG00016842
AMCG00016851 mRNA downstream 90412 32393881 ~ 32434138 (+) True AMCG00016851
AMCG00016852 mRNA downstream 177195 32480664 ~ 32481807 (+) True AMCG00016852
AMCG00016853 mRNA downstream 186444 32489913 ~ 32495747 (+) True AMCG00016853
AMCG00016855 mRNA downstream 194413 32497882 ~ 32498508 (+) True AMCG00016855
AMCG00016854 mRNA downstream 196222 32499691 ~ 32503372 (+) False AMCG00016854
TU19916 other upstream 550440 31728556 ~ 31734316 (+) False AMCG00016830
TU19913 other upstream 557739 31721939 ~ 31727017 (+) True AMCG00016829
TU19688 other upstream 1223611 31059340 ~ 31061145 (+) True G15855
TU19453 other upstream 2047915 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 2171472 30109599 ~ 30113284 (+) True AMCG00016770
TU20166 other downstream 195587 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 196107 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other downstream 197327 32500796 ~ 32503256 (+) False AMCG00016854
TU20240 other downstream 552892 32856361 ~ 32857440 (+) True G16289
TU20517 other downstream 1365160 33668629 ~ 33672620 (+) True AMCG00016901

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051857 False 2482 mRNA 0.48 11 NC_007114.7 37059803 ~ 37082618 (-)
grasscarp (Ctenopharyngodon idella) CI01000046_06489840_06506540.mRNA True 2490 mRNA 0.46 10 CI01000046 6489620 ~ 6507607 (+)