RNA id: AMCG00016851


Basic Information

Item Value
RNA id AMCG00016851
length 4091
RNA type mRNA
GC content 0.55
exon number 25
gene id AMCG00016851
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32393881 ~ 32434138 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCCGGGCTGTGGGACCAGCCCACTGCAGTGCTGCTGTCTTTTGCTGAACGGACCCTGTAATGATCCTCTGGTCTCTCCACTCTACGCGTCTTCCTTCTTGGCTTCATCTAGATATAACTTTTTGTATTCGGCCAACTTTGCCAGATTGTACGGGAGCAGTGGGTGGTCCCCCGCGCCTAAGGACCGGCAGCCCTGGCTCCAGATCAACCTGAACCACAAGTACAGGATCACGGCCATCGCCACCCAGGGCACCTTCAACTCCTATGACTGGGTGACCAAATACACCCTGCTGTATGGGGACCGGCCTGATACCTGGACGCCATACATACAGAGGGGAGGGAACTCAACGTTTTCAGGAAACTGGAACTATTACCAGGTGAAGAAGCACACTCTGCACCACGCTGTCACCGCCAAGCACCTGCGCTTCCTGCCCCTGGGCTGGAATCCTGCTGGCAAGATTGGAGTCAGGCTGGAGGTGTATGGCTGTTCCTACGACTCTTACGTCATGGCGTATGACGGGGATGACATGGTGGCCTACAAGTTTGCGAGGAGGACATACAGGACGCTGAAGGACCACATCGCCCTGAACTTTAAAACCCTGGAGCGGGATGGCGTGCTCATGCACAGCGAGGGAATGCAGGGTGACATGCTGACCCTGGAGCTGAAGAACGCCAAGCTGTATCTGCACATCAGCCTAGGGAGCAGCACCGTTCACGAGGTGTCAGGACACACGACCCTTACCGTTGGCAACCTGCTGGACGACCAACACTGGCACTACGTCACTATAAAGCGCTACGGCCGCAACGTCAACCTGACCGTGGACAGCCACACAGAGAGCGCTCACTGCAATGGGGATTTCGAATACCTGGACCTCGACTCCCAGGTGTACATTGGTGGAGTGATAGAGCCCGGCATGCCACATCTGCCCGACAGGCTCAACTTCCGGGGCTGCTTGGAGAACGTCTTTTACAACGGGATCAATATCATCAAACTGGCCCAGAGGAAGATGCCCGAGATACGGTTTCCTCATCGCCAGAAGACGGTCCGCTACGCCTGCCAGGACGTCCTGCTGAAGCCCCTGACGTTCAGTGGGATCAACAACTACCTGCAAGTACCCGGCATCTACAGGCGCAACCGCATGGCCGTCAAGTTCAAGTTCCGCTCCTGGGACTACACCGGCCTGCTTATGTACACCAACTTCGCTGACAACCTGGGCTCCCTGGAGCTGGGCCTGAGTGAGGGATACCGTCTGAATGATGGGTTCTGGCACACAGTGGATCTGGTGGCCAGGGATAACTTTGTGACCGTAACCATTGACGAGGACGAAGGCTCTCCTCTCCGGATCACCAACTTCTTCACTGTCCGCACTGGTGACAGGTACTTCTTCGGAGGGTGCCCCAAGACCAGCAATGGCAGCATGTGTGTCACCAACCTCAAGGCATTCCACGGCTGCATGCAGCAGATCTTCATCGACAGCGAGCCGGTGTACCCCAAACCTCTGTGTATCCAGTCCTGGGATGACTTCATATGTATCTGCGACAATACGGGCTATAAAGGAGAGGTGTGCCACAAATCGGTCTACAAGGAGTCATGCGAAGCCTACCGGCTCAATGGCAAGTACAGCAGCGGGAACTACACCATCGACCCGGACCTGAGCGGCCCGCTGAAGCCCTTCGTGGTGCAATGCAACATGAAAACAAATAAGGCTTGGACAGTGGTGAAGCACAACCGGATGGACAACACCAAGGTGACTGGCTCCGCTATGAACAGACCCTACATGGGTGACGTCCAGTACTACAACGCCTCCTGGGCTGAGGTGACTGCCCTGGCCAACACCTCGGAGTACTGCGAGCAATGGATCGAGTACTCCTGCTACAAGTCCAGACTGCTCAACACTCCCAGTGGAAATGCCTTTAGCTACTGGGTGGGCCGGAATGACGAGAGACACGCTTACTGGGGTGGCTCTTTCCCTGGCATACAGAAGTGTGGCTGCGCTATCAACAGGACCTGCACCGACTCCAGATTCTACTGCAACTGTGATGCTGACTACAGGCAATGGTCCTCTGACAGGGGCTGGCTGAACTACAGGGATCACATGCCCGTGACGAAGGTGGTGGTTGGAGACACGAACAGGACAGGCTCGGAGGGCCAGTTCAACATTGGGCCGCTGCGTTGCTTTGGAGACAGAAATATATGGCACACCGTGGCATTCACCAAAGCCACGCACATGGTCTTCCCCACGTTCAAGCCCGGAACCAGcgcagacatcaccttttacTTCAAAACCACAGCTGACCATGGTGTCTTCCTGGAGAACTCGGACGACCGCCATCGTAACTTCATCCGAGTGGAGCTCAATAgcaccacagacctgctgttcATCTTCAGTGTGGGTGACGGGATCATCAATGTGACGCTGAGGTCACCCTGGGCACTCAACGATGATGAGTGGCACCAGGTGAAGGCTGAGATCAATGTGAAGATGGCGCGGGTCAAGGTGGATTACCAGCCCTGGGTGGTGCGCAGGTTCCCGGCACAGAGTTTTGTCACCATGGAGTTCACCAAGCCTCTATTTGTGGGATCGGCTGAGCACAAACTCCGAGCCTACCTGGGCTGCCTGCGAGGGTTGCGGTTGAACGGGTTGACCCTTGACCTGGAAGGGAAAGTGAGTGAAGAGGAGGGGATCAGGCTGAACTGTACGGGACAGTGTCTGAATGCCACAGTGCCATGCCGGAACGGGGGCCGCTGCGTCGAGAAGTATGGCTACTACCTCTGTGACTGCAACAACACTGCCTTTGAGGGCTTCTACTGCTCCAAAGATATTGGGGGCTACTTTGAGTCGGGGACATGGCTGCGCTACAACATCCGCAAGGAGGCCATATCGGAGGACGCGCGCTTCGCCAACACACTGGACCCCCACAACTTCAGCCTGGGCTACAACCAGACCAGTGAGGAGATCGAGCTCAGCTTCAGCACCATCCAGAAGCCAGCTGTGCTGATGTATGTCAGCTCCTTCAGAAAGGACTACATTGCCATCATCTTGAAGACTGACGGCAGTCTGGATCTGAGATACCGCCTGGGGCTGTTCACCCAAAAATATGTGGTGTCATCTAGAAACTTGGCAGATGGGTATCCCCACTTTGTGAACATCACCAGGTTCGAGAGGGATATCCGCATACAGGTGGACTACATGGCGCCAGTCAGGGAAAAAATCCCCTTGCTGCAAGACACCAAATTTGACTCCCCAAAGTCCCTCTTTCTGGGGAGAGTAATGGAGGTGGGCGAGATCGACTATGAGGTGCAGAGACACAACACCCCCGGGCTGATCGGCTGCCTGTCCGGAGTGCGCTTCAGTAACATTGCCCCACTGAAGATGCACTTCAGACCCAATGCCACCAACATGAACATCACGGTGCAGGGACATCTGGTGGAGTCCAACTGTGGGGTGTTCCCCCCTGTCCTGCCCATGATCCCCCTGGAGGCGGACCCCTGGTACACCGGCCCAGTCTTCCGCTACATACATGATGACACCCCCAGCGGCCCTGTGCTCGCACTCATCATCATCCTGCTGCTCCTCTTAGTCTTTGGGGGGCTGTTTGCTCTGTACATGTACCTGTACCGCTACAAGGGCACCTACCACACCAATGAGCCCAAGAACCTGGAGTCCCCCGGCAGCGCCAAGCCCTTGACCGAGCCGCCCAGGAAGGAGAAGAACCTGCCCAAGATCCAGGAGGAGGCCAAGAGCGACTAGCAGCCCCGCCGCCAGGGTGCcgaggtggggtggggagggctTCCAGGACACTAATACATGttaatgttttcctttgtccattgggttttatgtgtgtgtatgtttaccGTGATCCAATCAAACGTAAAGATTATACAGGATTACCGAATGTCTGAGCTGCAGTTATAGTTTAGCGGAGGGAAAAAAGACCAGAACACACCTGCCCCACACTGTGCTACAGGGTTGTCTAACCAGCAGAAGTGCCTGAAAAGAGATATCATTGCACCAACTTCTATGCTTCTATGAAAATTCTCGGATGATCTGAAgaaattagtgtgtgtgtatatatatatata

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K07379 CNTNAP1; contactin associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20094 lncRNA upstream 131209 32261711 ~ 32262672 (+) True G16169
TU20089 lncRNA upstream 140652 32251814 ~ 32253229 (+) False AMCG00016841
TU19924 lncRNA upstream 638454 31755042 ~ 31755427 (+) True G16037
TU19869 lncRNA upstream 749366 31615220 ~ 31644515 (+) True G15995
TU19822 lncRNA upstream 889329 31504079 ~ 31504552 (+) True G15966
TU20144 lncRNA downstream 4116 32438254 ~ 32442585 (+) True G16211
TU20241 lncRNA downstream 423413 32857551 ~ 32859016 (+) True G16290
TU20283 lncRNA downstream 547641 32981779 ~ 32982330 (+) True G16323
TU20320 lncRNA downstream 745567 33179705 ~ 33179940 (+) True G16350
TU20321 lncRNA downstream 746101 33180239 ~ 33180439 (+) True G16351
AMCG00016848 mRNA upstream 90412 32284756 ~ 32303469 (+) True AMCG00016848
AMCG00016841 mRNA upstream 133254 32251808 ~ 32260627 (+) True AMCG00016841
AMCG00016843 mRNA upstream 148346 32225792 ~ 32245535 (+) True AMCG00016843
AMCG00016840 mRNA upstream 177558 32210141 ~ 32216323 (+) True AMCG00016840
AMCG00016839 mRNA upstream 187007 32198948 ~ 32206874 (+) True AMCG00016839
AMCG00016852 mRNA downstream 46526 32480664 ~ 32481807 (+) True AMCG00016852
AMCG00016853 mRNA downstream 55775 32489913 ~ 32495747 (+) True AMCG00016853
AMCG00016855 mRNA downstream 63744 32497882 ~ 32498508 (+) True AMCG00016855
AMCG00016854 mRNA downstream 65553 32499691 ~ 32503372 (+) False AMCG00016854
AMCG00016861 mRNA downstream 156629 32590767 ~ 32607382 (+) True AMCG00016861
TU19916 other upstream 659565 31728556 ~ 31734316 (+) False AMCG00016830
TU19913 other upstream 666864 31721939 ~ 31727017 (+) True AMCG00016829
TU19688 other upstream 1332736 31059340 ~ 31061145 (+) True G15855
TU19453 other upstream 2157040 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 2280597 30109599 ~ 30113284 (+) True AMCG00016770
TU20166 other downstream 64918 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 65438 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other downstream 66658 32500796 ~ 32503256 (+) False AMCG00016854
TU20240 other downstream 422223 32856361 ~ 32857440 (+) True G16289
TU20517 other downstream 1234491 33668629 ~ 33672620 (+) True AMCG00016901

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051855 True 2166 mRNA 0.48 13 NC_007114.7 36920472 ~ 36932515 (-)