AMCG00016877 (pus3)


Basic Information

Item Value
gene id AMCG00016877
gene name pus3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33168630 ~ 33171933 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016877
ATGTCAGAGGGGAGCTGCCCGTTGCTGCCATCCCATGAAGCTTTGCTGAAGAGAGTGAGGGAGCtggagggagaggtggagaggcTGAGAACCCTGCTGAGAGAGCGGGATGGAGCAGGGGGCGAAGAGCAGGTCACAGATATGGGAAGTGCCACTGTGGGGCAAGAGGGTGAGGGGGTTGTCAGCCAGCAAGCCCAAGGGACAAATGGGCAGACAGAGGGCAGCAAGAAGAAGGGGAAGAAAGGGGGCCAGGCACGGCCATTCGATTTCTCAGTCCACCCTCGGCGCCATGTGGCCCTGCGCCTGGCCTACCTGGGCTGGGGCTACCATGGATTCGCCTGCCAGGAGAACACCAGCAACACTGTGGAGGCTCGGCTGTTCGAGGCCCTGGGCAAGACACGGCTGATTCAGGACCGCCAGGTTTCCAACTATCACCGCTGTGGGCGCACTGACAAGGGCGTGAGCGCCTTCTCCCAGGTGATCTCCATTGACCTGCGCTCCACACAGTTCTGTGGGGGGCTGGGCGTTCTCCCCCCAGCTCAGGGCAGCAGCGTGCCCTCTGGGGGCAGCTTGAACTCCGCAGAACTGCCCTATGTCAAGATCCTGAATCGCGTGCTGCCCCAGGACATCCGGGTACTGGACTGGGCGCCGGTGGAGACGGGCTTTAGCGCGCGCTTTGACTGTCAGTCCAGGACTTACCGGTACTACTTTCCCCGCGGAGGCCTGGACACTGCTCTCATGGCTGCTGCCGCCAGACGCTACGAAGGCACCCATGACTTCAGGAACCTGTGTAAGATGGATGTGGGCAACGGGGTCCTGCAGTTCCAGAGAACCATCCTGTCCGCCTCCGTCCAGCCTGCCCAGTCCCTCCAACACCCCTCTGCTGACCCTTACGACCTCTTCGTGTTCGAGGTCAAAGGGCTGGCCTTCCTCTATCACCAGGTGCGCTGCATGATGGCCATTCTGCTCTTGATTGGACAGAAACTGGAGGCTCCAGAGGTGATCGACCAGCTATTGGACGTCGAGAACAATCCCAGAAAACCCCAGTACAGCATGGCAGTGGACTTCCCCCTAGTCCTGTATGACTGCCAGTTCAATGGGTTGAGCTGGCAGGGCGAGGGGGAGGAACTGGCTCAGTCCGCTGTGTCCACGCTGCAGCAACACTGGACTCAAACAGTCATCAAGACGCAGGTCCTCCGAGACATGATCCAGGACCTGCACAGCACCGGTGAGTTCTCTTCTCCCTCTTGTTGGCTACTGGAAGGCACCAAACAGCGCAACTACCGCCCCCTGCTGGATAGGCCGCGCTGTGAGAGCCTGGAGTCCAGGATTGAGCATTTTGTGAAGAGAGGCCGGCTGGAGCGAGAGGAGAATGAGGACGGGGACGGGGGTGTGCACAGAGGCAAGAGGTCAAAACACCAGAAGACCACAAACCTGCCTAGCTAA

Function

symbol description
pus3 Predicted to enable pseudouridine synthase activity. Predicted to be involved in mRNA pseudouridine synthesis and tRNA pseudouridine synthesis. Predicted to act upstream of or within pseudouridine synthesis and tRNA processing. Predicted to be active in cytoplasm and nucleus. Orthologous to human PUS3 (pseudouridine synthase 3).

NR:

description
PREDICTED: tRNA pseudouridine(38/39) synthase, partial

GO:

id name namespace
GO:0001522 pseudouridine synthesis biological_process
GO:0008033 tRNA processing biological_process
GO:0003723 RNA binding molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG:

id description
K01855 PUS3, DEG1; tRNA pseudouridine38/39 synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016877 True 1446 mRNA 0.60 6 33168630 33171933

Neighbor

gene id symbol gene type direction distance location
AMCG00016878 NA coding downstream 7671 33155283 ~ 33160959 (-)
AMCG00016876 dcakd,LOC107667188 coding downstream 20201 33141438 ~ 33148429 (-)
AMCG00016869 NA coding downstream 234124 32931693 ~ 32934506 (-)
AMCG00016870 NA coding downstream 237817 32927031 ~ 32930813 (-)
AMCG00016871 NA coding downstream 244226 32922429 ~ 32924404 (-)
AMCG00016879 NA coding upstream 19769 33191702 ~ 33195256 (-)
AMCG00016884 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 coding upstream 135808 33307741 ~ 33318582 (-)
AMCG00016888 NA coding upstream 161529 33333462 ~ 33348062 (-)
AMCG00016887 kcnh6a,LOC106601567,LOC105012970,LOC108427397,LOC106527280 coding upstream 209951 33381884 ~ 33390755 (-)
AMCG00016893 map3k3,LOC102777599 coding upstream 267619 33439552 ~ 33473811 (-)
G16325 NA non-coding downstream 184166 32984254 ~ 32984464 (-)
G16293 NA non-coding downstream 307033 32859241 ~ 32861597 (-)
G16292 NA non-coding downstream 311165 32854781 ~ 32857465 (-)
G16250 NA non-coding downstream 731947 32434236 ~ 32436683 (-)
G16249 NA non-coding downstream 740550 32427852 ~ 32428080 (-)
G16375 NA non-coding upstream 83720 33255653 ~ 33256382 (-)
G16377 NA non-coding upstream 112081 33284014 ~ 33284227 (-)
G16378 NA non-coding upstream 120098 33292031 ~ 33292249 (-)
G16422 NA non-coding upstream 153153 33325086 ~ 33328341 (-)
G16502 NA non-coding upstream 456167 33628100 ~ 33628919 (-)
AMCG00016859 NA other downstream 661311 32497507 ~ 32507319 (-)
G16247 NA other downstream 745192 32423058 ~ 32423438 (-)
AMCG00016847 NA other downstream 900662 32261549 ~ 32267968 (-)
AMCG00016815 NA other downstream 1780362 31380547 ~ 31388268 (-)
G15787 NA other downstream 2639130 30526292 ~ 30529500 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other upstream 4143 33176076 ~ 33178883 (-)
AMCG00016889 LOC107570748,LOC106906011 other upstream 219856 33391789 ~ 33434651 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other upstream 316792 33488725 ~ 33513579 (-)
G16563 NA other upstream 934757 34106690 ~ 34107941 (-)
AMCG00016938 NA other upstream 2224059 35395992 ~ 35399030 (-)

Expression


Co-expression Network