G15890


Basic Information

Item Value
gene id G15890
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31172185 ~ 31176602 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU19730
cacagaCAGCCTGCATTACAGTCCCAGACTGAAAAGTGCAGGCTTGAGCTGGAAACACTCAAATACTATCCCAGAATGAACAAAATCCTTTCAGACAACACAGCCACCACCTGAGCAATACACAGAGTCACCACCAGGAGCCAGCGCTGAGGCACTTTGGAATAGAGAAATCCCAAACAAACCGCAGTTGCTCCGTTAATCGGTTCCAGACCTACTGTACTCTTCCTCACTCTTACCACTGGAAACTAAACATACTGCTTCACTCCAACAGATTCCTTTCAATTTCATTCTTCTTCCgaaagttaaaaatatgtaatgtgtttacaggaaaataaattctgatattaaaaagaaagaaaaaaatccaatcTTCAAATTTTCCATTGACCACAATGCTATTGCATCACCTCATGAATAATGGGAAAATACCAAAATCTCTCTTTAAAGACATCTACAGAAGTAAAaCATGGTGGCTTTCTTTGGCTGTCATTTGTTGTTGACCGGGACAACGATATTGCACTGCTCCAGAATACACCATGATTTGTGGGTGGGAATCCTTCATTTTCTACGCAGATTCTCAAGATTCTATCGGAAATGTACAGATGAcgacaacaacacacaaatgaaatgcaaattaaatattaaaaagccaAACCTAATGGTAAATCCTTGCGTGAAACCTGTGCTTATAAAAAGCTACAATACTTTGCATGCACTTTACAGTATAGcaaaaaaagaatagaaaaaaaagctaCAATACTTTGGATTTGGTTCCTCATTGCCCAACGGCCCTCagttagagagaaaaaaaactgaaaatgtacttGTCCTTGTAATCTGTTCCGAGAAACAATGGCACTTATCTTTAGTTCGACATAAACAGtcaaagtatttttcttattttttcattcagaaaaaataaatttaaagtTCCTtgtatccatccattttcaaaaccacttatcctggcaaggggaagccagagctgatcccagcaggcatatgGCACAAGGCAGGAGTACACCCAGGATggggcaacacacacagggcaatttagagagaccatggggagaacatgcaaactccacacagacaggtccCCCCAAGCCAGCATTTGAACCcaggaccctggagctgtgaggcagtaGTGCTAACCACCGTACCACCCTTCTTTGTATCTATTATGCCAAAATGCTTTCATCACAGACATTTTCATAATGATTACAATGTTTCTTGGAATCAAGCATCTGTCAGAATGTACCTAACAAAAAGGCCATGGCAGAAAACCCCGGCCATCCATGTTCAAGAACACAATGCTATAGCAGCTATGTTGGTTTACGGAGACTCCAACTATGAAAAGGGAATGATGAATTCAGCATCTCCAGATTTTGGAAGCTTAGTTTTTCAAAGGGTTTATTGTAAGGTGTAACAGACACCAACCTGGGCTGTTGTTTTGTAACCACTTGTAAAAGACCTTGAGGTGAACCTGTTTACTTGCTCATGCCTGCATTGAATGGGTAGAGTGTTCTCATTAATAAGACAATGTCAGCCCCCTGGACCTTCTGACGTTTCCACAACACTACAACCAAGCACAGTGAATCCCTCAAAACAGAATTATACCCCCAACACACAAGCAGCCTTTGTTTACTTTAGACTTGTAGTGTCATACAAAGCTGTTCAAAAATTCAATCTGAACCTTAGCTTTCTGTATGTGTGGTTCTGCCTTTAGCTATAAAGTTGAATGTCTACagtaaaaaaaaggaaaataaggaTTATCATACTTCtgatttctttttcaaatgcatttgcttataCAAAGCGgtctttctttttagtttttcatcgTGTTGAGTTCCCGTGGCGAACACTTCCACAGACTCACTGAAACTCAAACCCTAACATCAAAGGAAAACCAcagtcctttttcttttctccttctcAGCTTTTCTACTATGACCAATAAATCAAGAATGCAATTAAATTGTTGTGCTTTCACCCTCCggaagggggggaggggcaAATGTTAGAGAGGTCTCAAACTAACAGACTAACACAGTCAACGCATTTGTTTGACACAAACAGCATGTGAACTGCATTCTGAGTACCCAGGGTGgagttctgtcttttttttacaaaaccaaAGACCACCCAACAGAACGAAAATAAAGGATACATAGGCCTGGAATAATGCTTTGTAACTTTTACAGTTACCATTCTGCTCTAGTTTAAAGACAGCACAGGATTAAAACAGGATTATATTGCTATTTGCCTTCCCTAATCCACATTTGTGTCTGCTGAATTCCCTCTGAGCTGCACAAGCCCATATAGTTTGTCTGTGGAGCTGCACGATGAATTTGCCATGTTTTTCAAACACTAGAACATTCTTTAGCATGCTTCTCAAATTCCATACAGAATTACAGAATAAATCTCTCCCCTGGGGTCAATGAATCCATGTTTGAACCTCAGGACATGAGCAAAGCGTTTACTGCACTACAGCCGACGGCACTGACAGCCCATGATTCCCCATCCGATCATGACAATGGTCACTACCCAGGCGCAGTCAGGAATAAAATCAATGAGTATGAAGGTTTGGGATTTTTACACAATCGATCCTGGCGGGGGGGCCCCCCATGAGATACTTCAACCTCAGCAGAATGTAAATCGTGAAAGCTGTGACCAAAGAATACCTTTTGCAAACAGAAGACAGCACAAGGAAAGTCAGGTTTAAAAACGTAAGTCTCTATAGTCTCTGACTGTTCATCAAAATGCATCGATTCTGTATTTCGATAAGCAagtataacaatatatattgcaatgaggcaggaagaaaaaaaaaaaaacatatactgctcatatattttgttatacttGTTATTCAACTTGAGCTACGCGTCATCAAATAATGAAGCTTAAGAAAAGGACAAGGGGGTACAAGGAGATAATGTTGTCTTGCAGATAAAGGGGGAGTCTTCTTTCCTCCTGTTTCTCACAGGTGTCGGCCCTGGTTTCCATGCTGCTTGGCTATGGGTGAGTCACTTGGTTTTCCGCTGTGCTCCACACAGCCCCAGAGCATCTTCAAACACCCGTCAGTccgtcagtctgtcagtcagtctgtctgtctgtgtcagtctgtcCATCCCGTCTCGTCCCGTTACTCTGGCTGCTCGTTCATCTCCATGTCAGACACCAGGATGTTTTTCTCGGCGGACTCCGTGGGGGCGGAGTTGGTGCGGCTGTAGCGTGCCCCCTCGAAGGCCCCCCGTGCCCCACCGCTCCGCCTCCTGTACAGGAAGATGGCGGCCATGATGAAGAGGCACAGGGCCACAGCGGTCACGATCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19730 True 3340 lncRNA 0.42 2 31172185 31176602

Neighbor

gene id symbol gene type direction distance location
AMCG00016802 LOC105013322 coding downstream 111499 31060351 ~ 31060686 (-)
AMCG00016800 NA coding downstream 156215 31012563 ~ 31015970 (-)
AMCG00016801 psmc5,LOC107753303,LOC107745657,LOC106579096 coding downstream 163759 31003106 ~ 31008426 (-)
AMCG00016793 NA coding downstream 608591 30558256 ~ 30563594 (-)
AMCG00016792 NA coding downstream 614393 30551128 ~ 30557792 (-)
AMCG00016807 becn1,LOC102786760 coding upstream 954 31177556 ~ 31183301 (-)
AMCG00016812 NA coding upstream 115680 31292282 ~ 31315388 (-)
AMCG00016811 NA coding upstream 159843 31336445 ~ 31337280 (-)
AMCG00016816 NA coding upstream 224215 31400817 ~ 31403944 (-)
AMCG00016823 nmt1,LOC102778525 coding upstream 467254 31643856 ~ 31653933 (-)
G15864 NA non-coding downstream 65393 31103379 ~ 31106792 (-)
G15854 NA non-coding downstream 138865 31033070 ~ 31033320 (-)
G15845 NA non-coding downstream 170057 30998634 ~ 31002128 (-)
G15746 NA non-coding downstream 740187 30429929 ~ 30431998 (-)
G15716 NA non-coding downstream 935318 30233548 ~ 30236867 (-)
G15927 NA non-coding upstream 193478 31370080 ~ 31379449 (-)
G15947 phb,LOC107661032 non-coding upstream 244142 31420744 ~ 31421968 (-)
G15962 NA non-coding upstream 300241 31476843 ~ 31481401 (-)
G15976 NA non-coding upstream 312659 31489261 ~ 31489836 (-)
G15982 NA non-coding upstream 327477 31504079 ~ 31504548 (-)
G15787 NA other downstream 642685 30526292 ~ 30529500 (-)
G15706 NA other downstream 969834 30201459 ~ 30202351 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other downstream 1946598 29201872 ~ 29225587 (-)
AMCG00016732 NA other downstream 2386678 28781472 ~ 28785507 (-)
AMCG00016712 NA other downstream 3014985 28130012 ~ 28157200 (-)
AMCG00016815 NA other upstream 203945 31380547 ~ 31388268 (-)
AMCG00016847 NA other upstream 1084947 32261549 ~ 32267968 (-)
G16247 NA other upstream 1246456 32423058 ~ 32423438 (-)
AMCG00016859 NA other upstream 1320905 32497507 ~ 32507319 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other upstream 1999474 33176076 ~ 33178883 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023678 NA non-coding NC_007135.7 CM002908.2 38602017 ~ 38609746 (-)
striped catfish (Pangasianodon hypophthalmus) gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 misc NC_047613.1 CM018559.1 17233977 ~ 17236129 (-)