AMCG00017403


Basic Information

Item Value
gene id AMCG00017403
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 1876676 ~ 1894462 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017403
GATGGGGATGAGAGCTGTTGAGAAAAGTAGCAGGttgttcaaaatataaaaatagcatgCGGGAAATTAGCCTGCCACCACTGGATTCAATTTACAGATATACTAAATAATGGCAATTCCGGGGATAGAAGAGCTGTTTGAATTACAGAGGTTGCCAAACGATGGATTACTTCTGTTACTCTTCCTGTTGTACGTCCCAGTCGGTCTGTGTTTGATGCTGCTCAGAATATTTATTGGTGTTCACGTATTCTTAGTGAGTTGCGCGCTTCCGGATAGCCTCGTCAGAAGatttattgtACGAGTCATGTGTTCAGTTCTGGGAATGTATGTTAAACAGGATAACCCCCGCCAGAGAGACAAGAATGTGAAATTGTATATCTGTAATCATGTGACCCAGTTTGACCATAACATCATCAACCTTCTGACATCCTGCAACACGCCTATGGCAGAAGGGTTGCCTGGCTTTGTGTGCTGGGCACGGGGCTTCATGGAGCTGGGGATGATGTCAGGGAGGTCAGAAATGGCAGAGTCCCTCAGACAGTACTGTTCTACGGAGGGCAACCTACCCCTGCTGCTGTTTCCTGAGGAGGAAACCACTAACGGCCGAGTGGGCCTCCTCAAATTCAGtacCTGGCCTTTCACAGTTTCAGATTCCGTCCAGCCTGTGGCTTTGATTGCAAAGAGGCCATTTATACCACTGAATACAGAAGAGTCCTCCTGGATTACAGAGCTGTTGTGGACCTTCTTTATTCCATTTACAGTGTACCAAGTAAGATGGCTTCCAACTGTATCTAGACAAGATGGTGATTCAAGTCAAGAGTTTGCCAGTAAAGTGCAGGAGCTCTTGGCTATGAAGCTTGGTGTCGTGTCTACACAGATCACTAGAGCTGATAAAATAGAGCACATCAAGAGAAAAAGGCATATTGCACCTCGAACTACAAATTCAACTCACTCAGGTGCAAGACCCAGAACTAATCCTTTGGGCTTCATGGCTTCTAACTCGGGAGTGGAAGATGTTAGGATTGCTGGCATGGCTCAGCAGGTGAAAGAAGTGCTTCCAGATGTCCCACTCAGTGTTATCAAGAGAGATCTAGTGCGGACAAACTGTGTGGACACCACAATCACCAACCTGCTGGAGGGGGCTGACGAGACTCCATCAGATTCCTTGGGGGTGTTTAGCGCTACATCTTCTCGGAGTCAGTTCTCCACTGTCACTGCTCCTGCACCTACTTTGAAACCTACTGCTAAGTCATTTGGAAAATCTCCTTTTGACCGACACATGTCTCTGCAGGAAAGAAAAGAGGCCTTGTATGAATATGCAAGACGACgttatattgaaaaacatggACTAAATcaggaaatggaaaatgaacaCTGATGCTGGGTGTAATCAAGTCAAAAGGAGATTTATTtggaaagacagccattactatTAAAGAATTGTACTGAACTGAAAAGGACCTTGATGTCTGGAAAACTTTAATGTAAACTACAGTAACAAGTGTGTGGGGAAGACGtactttggatttttttttttttttttttttaaatcttttgcaTGGCAATCATGCATgtacctttttaattatttctctttACAAAGAAGATTATTTTGGTAAAAATTTGTATTCAGATCCAGTTATGGTGATGcatcttatattttgtacaacttTAAAGGTGATTTGCAAATCTTAAAAAGCGCAGTCCAGCTTGATTTATTTGAGACTGACATTTCTGTAGGTTCCTTACAATAGTTACTTATGTATTGAACCGATTgaactgcttttaaattaaatccatccATATTAAAGCAAAAAGGTAatctagtttatttttccattgtaatTGAATCCAggtttcaattattttacattttgttaccAACCAGTTACCAGTTACCAATTGCCAGGAGAAAGAGATCTTGAAActaaatgttttggtttgtgtgcCCTATAGAGAATTATGAATGTGATCAGCTTGTAACTGAATTTAGCTGATCTGGTGCAAGTGTATGTCATGGCCTGTACTTTAGAATAGATGTAAatgccaaaatatatattttttaaaagatgtaCCTACATTGAGTAACAGCTTAATGCTGTGCAGTGGTGCATGAGTCAGTTTTTAATCAAGGCTAAGTAATAGATTCAGTAATGACTATTCTTATTGAAAGGACTAGATACTTCTACACTGACAAATCATTAGTGAATTGTTTAAGCCCAATTACACTTTTGTTCAGCAAAGtagaaatgtgatttaatgaACAGTATGTGGGTGCTTGGTGCGCTATCTTCAAAATGAGTCGctttaatatttcttttttccacTTTGAGGAATTTACAGTTTAGTGAAATACCGgtaccttttatttattttgttgttgctttgcaGCTGAGGCACTGGATTTTAAAGCAGATGTGTACTTTCAGTTAAACATCAGTTTTGGATTGTTTTCTTAACTTGTACACACATCTGTTCTACTTTATCCattgtgaaaaaacattttttatctgTACCAAGGAGTTCTACTGGTGTGGAAGAGTTCAATTTTCTATTAAATGGCCTTGAGCACATCTTGAATGAGTGATTTATCAATCTGTTTTTACCATACAAAAGATTTTATGAATCTTAAATTACATCCTAAATCCAaagcatttaattcattttattttaaatttgagtggCTTATTTCACTCATATTCTTTACAAAAGGAAGgttgaaaaatgcattgttttgtattcaaAGATTTGGTTGTTGAATGTTTAACAAAGGCAAAACCGAACTGCACATTCTAGTGCCCTTTaatgaacattaaaataaaaaagaaacgaGAAACATTGGtccatacattttcttttaatctagTTACCTTAATTAGCAGTTACTTTATTTCCAGCACAGATGCATTTTCAATGTCTAAAAGTACAGCTTATCTGGAGAAGTTCTCTGCTGAAGCGTatagtccataaatattttactCCATAAAATTAAGCAGAAACGGCATGGTTTGATCTTGTTACATACCGTTAGGACCATAAATgtttgg

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K19716 AUP1; ancient ubiquitous protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017403 True 3047 mRNA 0.38 12 1876676 1894462

Neighbor

gene id symbol gene type direction distance location
AMCG00017402 NA coding upstream 1248 1872627 ~ 1875428 (+)
AMCG00017398 NA coding upstream 107828 1758386 ~ 1768848 (+)
AMCG00017399 NA coding upstream 140654 1734432 ~ 1736022 (+)
AMCG00017392 lbx2,LOC105028271,LOC106604581,LOC106611617 coding upstream 609342 1265442 ~ 1267334 (+)
AMCG00017390 NA coding upstream 988682 855278 ~ 887994 (+)
AMCG00017411 htra2,LOC106589831,LOC101079124,LOC104960364 coding downstream 29015 1923477 ~ 1929454 (+)
AMCG00017404 htra2,LOC106589831,LOC101079124,LOC105899646,LOC108441752 coding downstream 29015 1923477 ~ 1933451 (+)
AMCG00017405 NA coding downstream 153215 2047677 ~ 2049406 (+)
AMCG00017412 NA coding downstream 213429 2107891 ~ 2129512 (+)
AMCG00017413 fgfr3 coding downstream 533431 2427893 ~ 2460519 (+)
G89983 NA non-coding upstream 286871 1580983 ~ 1589805 (+)
G89938 NA non-coding upstream 535381 1340901 ~ 1341295 (+)
G89913 NA non-coding upstream 764517 1111954 ~ 1112159 (+)
G89908 NA non-coding upstream 905412 970643 ~ 971264 (+)
G89901 NA non-coding upstream 961463 915003 ~ 915213 (+)
G90042 NA non-coding downstream 34680 1929142 ~ 1934784 (+)
G90070 NA non-coding downstream 108576 2003038 ~ 2004606 (+)
G90144 NA non-coding downstream 567420 2461882 ~ 2504164 (+)
G90149 NA non-coding downstream 597445 2491907 ~ 2528801 (+)
G90248 NA non-coding downstream 1342983 3237445 ~ 3237726 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 1664740 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 1778279 48007 ~ 98397 (+)
AMCG00017422 leprotl1,LOC103152176 other downstream 792958 2687420 ~ 2695453 (+)
AMCG00017445 NA other downstream 2698340 4592802 ~ 4606571 (+)
AMCG00017446 NA other downstream 2768163 4662625 ~ 4688223 (+)
AMCG00017486 NA other downstream 4835276 6729738 ~ 7188643 (+)
G90877 NA other downstream 5773721 7668183 ~ 7671850 (+)

Expression


Co-expression Network