AMCG00017399


Basic Information

Item Value
gene id AMCG00017399
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 1734432 ~ 1736022 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017399
ATGAGCTACGACCCCTACAGCTCCCGCAGGCCCTGGGATGACTTCAGGGCTGGGCGTCCCACCAAGTCCTCCATCTCATCGTCTCTGTACACCGTACATCGCTCCGTGCCCTCTGTGAAGAGGTCCATCCGCCCAGCTTCCTCTCTGCCAGACTACATGGAGAAAGTGGACCTGACCCAGGTCAGCAGTCTCAACACAGAGTTGCTGGGTCTACGAGCCAAGGAGAAAGAGCAGCTGGTGGACCTCAATGATCGCTTTGCCACCTACATCGAGAAGGTCCACCATCTGGAGCAGCAGAACAAAGTGCTGCTGGTGGAGCTAGAAGCCCTCCGGCAGAGGCAGAGTGACCCATCACGTCTCCACCTCATCTACGAGCAAGAAGTCCGCAACCTGAGGGCCTTTTTGGACTCCGAGACCAATGAGAAGATGCGCATGGAGGCCGAGAGGGACCACCTGAGAGACATCTATGCCCAGATGAAGGATAAGTATGAGGAAGAGGTGCGCCTGCGAATGGACGCAGAGGATGCCCTCCAGAAGATCCGCGAGGAGGCCGACAAAGCGGTGCTGACCAACAGTGACATCGACGGAAGCATCACCTCCCTGGTGGAGGAGATCACCTTCCTCAAGAAGGTCTTCTCCGAGGAGAACAATGAGCTCTCTGCACAGATCCAAGCAGCCAACATCACTGTGGACATGGAAGTGGCCAAGCCTGACCTCTCCCTGGCTCTCAAAGAAATCCGCTCCCAGTATGAGAAGTTAGCCAACAAGAACATGCAGGCTGCTGAAGACTGGTACAGAACCAAGTTCGCCACTGTAGCTGAGATGGCCAGTAAGAACAATGAAGCAGTACGGTCCATCCGGGAGGAGACATCTGAGTACAGGAGGCTACTCCAGTCCCGGTCTTCAGAGATCGAAGCCCTGAGGAATGTCATTGACTCTCTGAACAAGCAGCTGGAGAACCTGGAGGAGAAGCAGTGCAGAGAAGTTGCCAAGTACCAGGAAAGGATAAATGAATTAGAGAAGGACATTAATGATGCTAAGCAGGAGATGGCCCGTTACCTGAGAGAATATCAAGATCTGCTGAATGTCAAGATGGCTCTTGACATTGAGATAGCTGCATACAGGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017399 True 1128 mRNA 0.54 2 1734432 1736022

Neighbor

gene id symbol gene type direction distance location
AMCG00017392 lbx2,LOC105028271,LOC106604581,LOC106611617 coding upstream 467098 1265442 ~ 1267334 (+)
AMCG00017390 NA coding upstream 846438 855278 ~ 887994 (+)
AMCG00017389 NA coding upstream 1294138 421509 ~ 440294 (+)
AMCG00017385 NA coding upstream 1562685 109675 ~ 171747 (+)
AMCG00017398 NA coding downstream 22364 1758386 ~ 1768848 (+)
AMCG00017402 NA coding downstream 136605 1872627 ~ 1875428 (+)
AMCG00017403 NA coding downstream 140654 1876676 ~ 1894462 (+)
AMCG00017411 htra2,LOC106589831,LOC101079124,LOC104960364 coding downstream 187455 1923477 ~ 1929454 (+)
AMCG00017404 htra2,LOC106589831,LOC101079124,LOC105899646,LOC108441752 coding downstream 187455 1923477 ~ 1933451 (+)
G89983 NA non-coding upstream 144627 1580983 ~ 1589805 (+)
G89938 NA non-coding upstream 393137 1340901 ~ 1341295 (+)
G89913 NA non-coding upstream 622273 1111954 ~ 1112159 (+)
G89908 NA non-coding upstream 763168 970643 ~ 971264 (+)
G89901 NA non-coding upstream 819219 915003 ~ 915213 (+)
G90042 NA non-coding downstream 193120 1929142 ~ 1934784 (+)
G90070 NA non-coding downstream 267016 2003038 ~ 2004606 (+)
G90144 NA non-coding downstream 725860 2461882 ~ 2504164 (+)
G90149 NA non-coding downstream 755885 2491907 ~ 2528801 (+)
G90248 NA non-coding downstream 1501423 3237445 ~ 3237726 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 1522496 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 1636035 48007 ~ 98397 (+)
AMCG00017422 leprotl1,LOC103152176 other downstream 951398 2687420 ~ 2695453 (+)
AMCG00017445 NA other downstream 2856780 4592802 ~ 4606571 (+)
AMCG00017446 NA other downstream 2926603 4662625 ~ 4688223 (+)
AMCG00017486 NA other downstream 4993716 6729738 ~ 7188643 (+)
G90877 NA other downstream 5932161 7668183 ~ 7671850 (+)

Expression


Co-expression Network