RNA id: AMCG00017399



Basic Information


Item Value
RNA id AMCG00017399
length 1128
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00017399
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 1734432 ~ 1736022 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAGCTACGACCCCTACAGCTCCCGCAGGCCCTGGGATGACTTCAGGGCTGGGCGTCCCACCAAGTCCTCCATCTCATCGTCTCTGTACACCGTACATCGCTCCGTGCCCTCTGTGAAGAGGTCCATCCGCCCAGCTTCCTCTCTGCCAGACTACATGGAGAAAGTGGACCTGACCCAGGTCAGCAGTCTCAACACAGAGTTGCTGGGTCTACGAGCCAAGGAGAAAGAGCAGCTGGTGGACCTCAATGATCGCTTTGCCACCTACATCGAGAAGGTCCACCATCTGGAGCAGCAGAACAAAGTGCTGCTGGTGGAGCTAGAAGCCCTCCGGCAGAGGCAGAGTGACCCATCACGTCTCCACCTCATCTACGAGCAAGAAGTCCGCAACCTGAGGGCCTTTTTGGACTCCGAGACCAATGAGAAGATGCGCATGGAGGCCGAGAGGGACCACCTGAGAGACATCTATGCCCAGATGAAGGATAAGTATGAGGAAGAGGTGCGCCTGCGAATGGACGCAGAGGATGCCCTCCAGAAGATCCGCGAGGAGGCCGACAAAGCGGTGCTGACCAACAGTGACATCGACGGAAGCATCACCTCCCTGGTGGAGGAGATCACCTTCCTCAAGAAGGTCTTCTCCGAGGAGAACAATGAGCTCTCTGCACAGATCCAAGCAGCCAACATCACTGTGGACATGGAAGTGGCCAAGCCTGACCTCTCCCTGGCTCTCAAAGAAATCCGCTCCCAGTATGAGAAGTTAGCCAACAAGAACATGCAGGCTGCTGAAGACTGGTACAGAACCAAGTTCGCCACTGTAGCTGAGATGGCCAGTAAGAACAATGAAGCAGTACGGTCCATCCGGGAGGAGACATCTGAGTACAGGAGGCTACTCCAGTCCCGGTCTTCAGAGATCGAAGCCCTGAGGAATGTCATTGACTCTCTGAACAAGCAGCTGGAGAACCTGGAGGAGAAGCAGTGCAGAGAAGTTGCCAAGTACCAGGAAAGGATAAATGAATTAGAGAAGGACATTAATGATGCTAAGCAGGAGATGGCCCGTTACCTGAGAGAATATCAAGATCTGCTGAATGTCAAGATGGCTCTTGACATTGAGATAGCTGCATACAGGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU112214 lncRNA upstream 144627 1580983 ~ 1589805 (+) True G89983
TU112165 lncRNA upstream 393137 1340901 ~ 1341295 (+) True G89938
TU112139 lncRNA upstream 622273 1111954 ~ 1112159 (+) True G89913
TU112134 lncRNA upstream 763168 970643 ~ 971264 (+) True G89908
TU112126 lncRNA upstream 819219 915003 ~ 915213 (+) True G89901
TU112288 lncRNA downstream 193120 1929142 ~ 1934784 (+) True G90042
TU112325 lncRNA downstream 267016 2003038 ~ 2004606 (+) True G90070
TU112326 lncRNA downstream 268054 2004076 ~ 2004606 (+) False G90070
TU112409 lncRNA downstream 725860 2461882 ~ 2504164 (+) True G90144
TU112419 lncRNA downstream 755885 2491907 ~ 2528801 (+) True G90149
AMCG00017392 mRNA upstream 467098 1265442 ~ 1267334 (+) True AMCG00017392
AMCG00017390 mRNA upstream 846438 855278 ~ 887994 (+) True AMCG00017390
AMCG00017389 mRNA upstream 1294138 421509 ~ 440294 (+) True AMCG00017389
AMCG00017388 mRNA upstream 1523478 209397 ~ 210954 (+) False AMCG00017388
AMCG00017385 mRNA upstream 1562685 109675 ~ 171747 (+) True AMCG00017385
AMCG00017398 mRNA downstream 22364 1758386 ~ 1768848 (+) True AMCG00017398
AMCG00017402 mRNA downstream 136605 1872627 ~ 1875428 (+) True AMCG00017402
AMCG00017403 mRNA downstream 140654 1876676 ~ 1894462 (+) True AMCG00017403
AMCG00017411 mRNA downstream 187455 1923477 ~ 1929454 (+) True AMCG00017411
AMCG00017404 mRNA downstream 187455 1923477 ~ 1933451 (+) True AMCG00017404
TU112033 other upstream 1522496 207586 ~ 211936 (+) True AMCG00017388
TU111991 other upstream 1636049 48007 ~ 98383 (+) False AMCG00017386
TU112484 other downstream 951398 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other downstream 951398 2687420 ~ 2695453 (+) False AMCG00017422
TU112690 other downstream 2926637 4662659 ~ 4667830 (+) True AMCG00017446
TU113125 other downstream 4993716 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 4993716 6729738 ~ 7184790 (+) False AMCG00017486

Expression Profile