AMCG00017408 (pank2,LOC107391889,LOC107103406,LOC101161204)


Basic Information

Item Value
gene id AMCG00017408
gene name pank2,LOC107391889,LOC107103406,LOC101161204
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2005759 ~ 2015562 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017408
ATGGAGTTGAACGGTTATCACTGTGAAGATAAAGCAGCCGCAGAAAcggaggaggaagagagtgtAGGGGAGAAGCAGCAGTGGGCGCAAAGAAAGGAGTCAGCCGCTCCAAGAGCTGGGGACACCACGGAGAAAGAAGCTGATGCGCCCAGAGCAAGTGCGTCGAGGGAGCGCCTACCGTCGAACTCTATGCCCAGGCAAAGGACCGACTCCCTGAAAAAGAACAGGCCGCCCTTCCCCTGGTTTGGGATGGACATCGGAGGGACCCTGGTCAAGCTGGTATATTTTGAACCAAAGGACATCACTGTAGAGGAGGAGCAAGAGGAAGTGGAAAGCCTGAAGAGCATCCGCAGATACCTGACGTCTAACGTGGCCTATGGGTCCACAGGCTTACGGGATGTCCACCTGGAGCTCAAAGACCTCACCCTGTGCGGGCGGAAGGGTAACCTGCATTTCATACGCTTCCCCACTCACGACATGCCTGCCTTCCTCCAGATGGGCAGAGACAAGCACTTCTCCAGTTTGCACACCATGCTCTGCGCCACAGGAGGGGGGGCTTATAAATTCGACCGTGATTTCTATACAATGGCTGATCTTCGGCTGCGTAAGTTGGATGAACTGGACTGCCTTATAAAAGGAGTGTTGTACATAGAATCAGTCAGGTTTAATGGACACTCGGAGTGCTACTATTTTGAAAACCCCACTGATCCTGATCTGTGCCAACAAAAGCCTTACAAGCTGGAGAACCCTTATCCCCTGTTGCTGGTTAACATTGGCTCTGGTGTGAGCATTCTAGCTGTTTATTCCAAAGACAATTACAAACGGGTAACTGGGACCAGTCTTGGAGGGGGGAGCTTTCTTGGATTATGCTGCTTGCTGACAGGCTGTTCAACATTTGAGGAAGCCCTGGAGATGGCCTCGTGTGGGGACAGCACCAGGGTGGATAAACTAGTGCGAGATATCTATGGAGGGGACTACGATAAATTTGGTCTCCCTGGCTGGGCAGTGGCTTCGAGttttgGGAACATGATGTGCAAGGAAAAACGGGAATCCATTTCAAAAGAAGACCTGGCCAGAGCAACACTGGTCACCATCACCAATAATATTGGTTCAATAACAAGAATGTGTGCATTGAATGAGAATATCCAAAGAGTGGTATTTGTTGGCAACTTCTTAAGGATTAATACACTTTCAATGAAGCTTCTGGCATATGCTATGGACTATTGGTCAAAAGGACAACTAAAAGCACTTTTTCTGAAACATGAGGGCTATTTTGGAGCAGTTGGTGCCTTGCTGGAGCTGTTGAACCAATCataa

Function

symbol description
pank2 Predicted to enable pantothenate kinase activity. Acts upstream of or within nervous system development and vasculature development. Predicted to be active in cytosol and nucleus. Is expressed in axial blood vessel; caudal vein plexus; central nervous system; and epidermis. Used to study pantothenate kinase-associated neurodegeneration. Human ortholog(s) of this gene implicated in pantothenate kinase-associated neurodegeneration. Orthologous to several human genes including PANK2 (pantothenate kinase 2).

NR:

description
PREDICTED: pantothenate kinase 3-like isoform X1

GO:

id name namespace
GO:0015937 coenzyme A biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004594 pantothenate kinase activity molecular_function

KEGG:

id description
K09680 PANK1_2_3, CAB1, coaW; type II pantothenate kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017408 True 1317 mRNA 0.49 7 2005759 2015562

Neighbor

gene id symbol gene type direction distance location
AMCG00017407 loxl3,LOC108441751 coding downstream 12218 1985621 ~ 1993541 (-)
AMCG00017410 NA coding downstream 41195 1948160 ~ 1964564 (-)
AMCG00017409 loxl3,LOC106612874 coding downstream 58834 1937122 ~ 1946925 (-)
AMCG00017401 NA coding downstream 224551 1771413 ~ 1781208 (-)
AMCG00017400 NA coding downstream 298482 1704946 ~ 1707277 (-)
AMCG00017406 NA coding upstream 7870 2023432 ~ 2032216 (-)
AMCG00017414 NA coding upstream 60616 2076178 ~ 2427127 (-)
AMCG00017417 letm1 coding upstream 513353 2528915 ~ 2566277 (-)
AMCG00017425 NA coding upstream 826360 2841922 ~ 3087650 (-)
AMCG00017430 ctnna2 coding upstream 1414059 3429621 ~ 3487525 (-)
G90066 LOC107678491 non-coding downstream 78908 1925208 ~ 1926851 (-)
G90017 NA non-coding downstream 174231 1827680 ~ 1831528 (-)
G89940 NA non-coding downstream 646778 1358684 ~ 1358981 (-)
G89939 NA non-coding downstream 664670 1340872 ~ 1341089 (-)
G89912 NA non-coding downstream 966288 1039272 ~ 1039471 (-)
G90093 NA non-coding upstream 39277 2054839 ~ 2055363 (-)
G90098 NA non-coding upstream 63478 2079040 ~ 2079244 (-)
G90129 NA non-coding upstream 169823 2185385 ~ 2185739 (-)
G90139 NA non-coding upstream 269663 2285225 ~ 2285529 (-)
G90157 NA non-coding upstream 357548 2373110 ~ 2464259 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 1653973 160054 ~ 351786 (-)
G89804 NA other downstream 1899874 105685 ~ 105885 (-)
AMCG00017418 NA other upstream 586221 2601783 ~ 2615562 (-)
AMCG00017426 NA other upstream 695740 2711302 ~ 2841894 (-)
G90400 NA other upstream 2527213 4542775 ~ 4544760 (-)
G90501 NA other upstream 3142822 5158384 ~ 5221021 (-)
G90502 NA other upstream 3206911 5222473 ~ 5223047 (-)

Expression


Co-expression Network