AMCG00017417 (letm1)


Basic Information

Item Value
gene id AMCG00017417
gene name letm1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2528915 ~ 2566277 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017417
ATGCCATTAAAGCGGCAGTCGAATGAGGAGAGGCAGGCATCCTCAAATGGCATTAATCCTGTTTACAAGATCCAGGTTACCATTGATGAAAACATCAAGATCATTAAGCAGGGAAAACCAAAAAGgAATGTGGTGTTCAGCGGCAGCAGTGTGACTCCAGTGTCGTTCagcacaccctcacacacagtgcacagcaGTGGCCAGCACAGCTATGTCCCAGGGGCACCGAGACTGTACTGCGGCCTGGTGGGCGCCGCTCCCCTGGGGGCTGCAGGGGTGCTGGTGAGACCCCAACATGTACCTGTACGGTGGTGGCACTGTAGCAGCCGGCTGTATGACGACTCCAAGGTGGAGAAGTCCTTGAAGAGTttaaaggacaaaaacaaaaagctggaGGAAGGGGGCCCGGTATACAGCCCCACAGTGGACCTGGAGCCGGTGAGGAAGTCCCTGGCCCAGAAGGTCGTGGATGAGATCAAGCACTACTACCATGGCTTTCGTCTGCTCTGGATTGACACCATCATCGCCGGCCGCATGCTATGGAGGATTCTGAACGGGAACGTGTTGTCACGTCGGGAACGAAGACAGTTCCTAAGGACGTGTGCAGATGTCTTTCGGCTGGTCCCTTTTCTGGTCTTCATCATTGTCCCTTTCATGGAGTTCCTGCTCCCCATAGCTCTCAAATTGTTTCCCAACATGCTGCCTTCAACCTTTGAGACCCAGTCCAAGAAGGAGGAGAGACTAAAGAAGGAGCTGAGACTGAAACTGGAGATGGCCAAATTTCTTCAGGACACCATTGAGGAGATTGCTCTGCGAAACAAGGCAGCTAAAGGGAATGTCACAGAGGAGTTCTCCACTTTCTTTCAGAAGATCAGGAACTCAGGGGAGAGGCCCAGCAATGAGGAGATCATCCGCTTCTCCAAGCTGTTTGAGGACGAGCTGACGCTGGACAACTTGACGCGGCCCCAGCTGGTGGCGCTGTGCAAACTGCTGGAGCTGCAGTCCATAGGCACCAACAACTTCCTGCGCTTCCAGATCATCATGAAGCTCCGGGCCATCCGCGCTGATGACAAGGCACGTGCTGTAGAGCATCACACAAGGCTGaaggtcagtgtgtgtttatctaTACAGTTGATATCGGATGAGGGCGTGGACAGTCTGAATGTGAAGGAGCTGCAAGCGGCCTGTCGGGCTCGGGGCATGAGAGCGCTGGGCGTGACGGAGGAGAGACTCCGAGAGCAGCTCAGACAGTGGCTAGAGCTCCACCTGAACCAGCAGATCCCCACCTCCCTGCTGCTCCTGTCCAGAGCCATGTATCTGCCAGACACGCTGTCTCCCGCAGACCAGCTCACCACCACCCTGCAGACCTTACCCGAGATTGTGGCCAAGGAGGCCCAGGTGAAGGTGGCAGAGATGGAGGGCTTCAAGGTAGACAACAAGACGAAGCTGGAGACCACGCTGGAAGAGGAGGCTGCCATCAGAAAGGAGAACCGCGAGCGTGAGATGGAGCGCCTGGCCGACGCTGCGGAGAAGGCCAAGGAGGTGCTGCAGGTGACTGCACAGAAGGAAGTGGAGTCCGCAGTGGACATGGAGGCAGCAGCTGTCAGTGTCAAGAAAAGCCAAATTGCCATGGATACTGAACAAGAGCTTGCCAACGTTGACCTTGCAATTCACTCTGAGACATTGAAGGACACAGCCCCTGTCTTGGAAGGGATTAAGGGAGAGGAGATCACCAAAGAGGAGATTGACATGCTGAGTGATGCCTGCACCAAACTGAAGGAGCAGAAGAAGCTGCTTACCAAAGAGAAGGAAGAGCTGGAGGACCTGAAGGACGACGTCCAGGAGTACAATGAGGACCTGGAGGAGATTAAGAAGGAGCTGTCCAAGACGGGCCAGGAGAAGGTGGTGCAGGAGTCCAAGGCCAGCATGCGGCTCTCGAAAAGGGTGAACCGCATGATCGGGCGCATTGACAAAATCATCACTGAGCTGGAGACGGACAAAAAGGTGCTGGATGGACAGCTCGACAGCGGGACCACTCCGCCAATTGGGGAGAACCTCATCAGCATCACTGAGCTGATCAGTGTGATGCGGCAGATCCAAAACATCCCTGAGCACAAGTTGCAGAGCATCGCCGATGCGCTGGACGAGAACAAAGACGGCAAGATCGACATCGATGACGTCATCAAGGTGGTGGAGCTGATCGACAAGGAAGATATTGACATCTCGACCAACCAGGTGGCAGATATCATGGTGATGCTGCAGAAGGAGGAGAAGCtggtggagaaggagaaggcAAAGGAGAAGGCGGAGAAGGAGCAGGCCGCCGAAGTGCAGAACTGAGTCCCTCCAGGAGGCACCACTCCATTCACAGGAAAGACATGAGAAACTAGCGGGCAAATTGGCTGTATGCATGGATGTCTGCATCGAGAGATTTAGAAATGACTGTTTCTAACTAGTTTCTCCATCTCTTTCTGATTGTAAAACTGAGTGACTAAGTTagggcagaggaggaggagatggtctacccaagaacaacaacagcaacaagaaaaacatgctATTTTTGAGCTCTGAAAAAGCTtataaaagaaattaaatatcatTTACTTTAGCGAAAATGAGTCTGAAGTAATTTCCTTATGGTTGTAaatcttgttttccttttctgggggaaaaaaatgaaattcccCAATATAGGGGCTAACCACTAAATTAAAGGCCTGACTTTCTCGTTTTCATTGCACaaatttaataagaaaatatcTACTGGTTGTTTGAGGTGAAGctgtttgccttttattttaataaagacatagtcattataatataatatagaaaTGGGattcagattttagttttttcctttttcttgcaCATTAAATTTTCATTACTGTCATTCCATAGGCATGGAAGTTGTTATTATtccatcattatttatttatttttttaacaggcaAGTCTCTTTGTAAACTGTATCattatattgaatgttttgttgTGATGTGGTAAAcataaatgtcattgttttataCCTATCAACATATagtcaataaaaaacattatttacgGATATaactcaaaaacaaatatattgaacaGGATCGTCAAATGAGCGTGTTTAGAAagtttataatatgtatattgaaCAGCTCCTTTACATATGAGAatgcagttattattaatactgaatACTTATAATTACCAAAGGTATGACAATAATTCAAAGATTTAATAGTGTGTTTACCTGTGCATGATAGCTCTATGTGTGGTTAATATGAATGATTTGCCTAAAACCTTACATATGCATAGTTGGTTTTGAAGATCTGACCAAAAATTGGATCCGTTTTTTTCTCCAGGGCTTTAAGATCACTTACTTGATGCTggctttgaaaattaaaatgtcatcttCTTGGAGAAGAACAATCTTTCAAGAGCTGGTATGCAGATCCCTTTAAAGAACTGTTTGAAAGATGATCATTCACAGAATAACATTGCTATTAAATCTGTTACTCCTGTTCACAGAGAAATGACAAAAGATGGTATCCACTAGGATGACAGTTTGTTTCCTATATCTTATGAggttttattagtagtattaatcTAGTGAAATAATTGAAGACTTGAAATGGTAAAACTGACAGCTTTAGGCATAACAGTAATACTAAGTCTGCAAATTGTTACTTGAACCACTATAAAGGAGACCTAAAGAATGCAATTGTGAATATGAATCTCACAATGGAAAATGTCATACCCAATGTTTTTGAACCTACTGTACAAATACATCTGTGGTGAggattgtattaaatatgtagTACATTTTTTGTAGTGGTACATGAGGCTTTCTAGTGGAAACAAATGTGCATCTACTTTGTATGGGAGAGGTATTTATATGTGGGTTCTTGTTTACTGGGGTGGATTCCTTGAGAGTTTTGTTGCCACTCGTGTTGAATGATCTTCTTGCAGGCACTGCTCTTCACTGCTCCACATTATATCATAGTTCATGATAATTAGATGAGCTTTCTTGATATGCCTTCACAATATTGCTGTGATCACTGGTGCACTACTACCTATAAGCTGCTCTGTGCTTAACAATTTGCCTATGTATAATTGCACTATGAAATTACATTCAGCTTCTTCAACTTTTGTTTGGACTCAGGTATCAATGTGTCAAAGTACATTGTAGGGAACTCTGATGAGGGCTCACTAGAGCATGGAGGATTTCCATTTGGAAACCATGCAGTGCAGGCTTTTGGGACCTCTCTGTACAGCAGACTTCCTGGGAAGCAGAGACTAACTTTGTACTGTATAACTGGAATGAAATAGGTACCAATATGTAATGTCGTAGGTTGTAGTATACCTTGAGTACAAGTAGTTCTAGGTATTTGATTGGTAGGAAtataatttgtcatttaaatgtagtacatagaaatatatatatatttttttttcttgtccttgAGAAACTGAGTTTCTCAGATTGCCGttcaaacctttttttctttttcatatgcAAATGTCAGTTACTATTGCTTTTATGTGCACTTACTTGCAGGAAGAACTGTGTCCAGTGAGACTGAGGTTTTCTGTTAGTGTCTTTGAATTCAGCACATGGCAGAGAAAGTCACAGGACCATCTCACCCTCATACAGCAGTGGTAGACCTAATGCGCAGGACTTAATGCATGTTTCTTGAGTTCATCTGAAACCTGTTCTACCCAGAATATATAGCTTTTGTCTATATACATACGTTTTCATTGGTCCgtgacatttgaaataaagtgcagtttgaaaaattgaaataaaatgtctgaatgCAATTGTCATTGTGTGGTTGCAGGTGAAATGGCAGCAGCACATGCTATTGAAATGTGCAGTGCTCTGAAACAGATTGGTGTGTAAATTTATGgtcatttttaaactatttttctaAAAAAGAATTATATCATCCTCCTCCAGCCATGGAGTTTGCAGACCTTCACACtggtatacatttcaaattgtattttttatttatttgggtacactcattaaatgttataaacacatacagctctggaacaaattgagaccacttaacattgatttctgaacttggagtggtctctttttccagaactgtatatagattatctgattaaattaacatttttagctttatattttttaatgcccCTTTAAAccagttattttacattttccattttgcctTGTTTGAGCTGAACCACCATAGAGAAGCTGAGAGCAATCCCCTTTATCTCACAGAACAGTTGCACTTAGTACAGTATCTCAGGAAGACGGGTGCAGGTCAGAGATGTAGGAAGAAGTAATGGTCACTTTAAGGTCTGCTCTATAGTAGAAAGGTCCACTTCTCAGCATGGAAAACCAAACACTGGGGAATTCAGTTAAACATGGAAACAaggtcattatatatatatatatatatatatatagcatttaaATGTGTAGGAGAATTcaaagattgtttttattaacataaagGAAACCCCCTGTTGTGCACATTGGGTTTATCATGAAAGATTCTCCCCATTACTTCTGAAACTCAGTAAGTGCACAAATAAGCTTAAAATTTGGCTTTGGGTTTTGAGAAAATCATGCTATATGAATGCATTGTTTGTGAAGTGTCTCCACGGTTGACATTTGTTACTTAGCTTTTGAAATGCTGCTTGTAGCTTTAGCTGTTAGGTTATGTCTCTGTGGCCATGGTTGGTACAttgaatatttttgttcagcaaatcaggtttaaaaatgtattattttaactatcaaACAAGAACAGTAAACAATTTGCATTCATTGAATGCTGCTTGATTTATTGTCGTTGTGTGGATAATCTCACTCTTAGTGTAAAACccaataaacaaaatgcttggTTAGAGAGGccttgactgattgattgaataCATGGTCAAATGGGTGTAAAGTAAAAGTGGAGagaggaataaaaaacaacttcAAACAATAAATTGATTTCAAATCTGATGTGGAATATCTATAATTCAGGGCATGTCGGTGATTGTTCTCTATGTTTGCATGTGTAATTACAGTACAGATAGTTGTGGTGGTATAGTAACTAACGGCTACTAAATTAGCTAAATGATTGAGGCAAACCAAATAAATCTCCAGtcccagaaacaaagaaaaacatttgcaaaaggcTTAACATTTGGTATGTTAAACCTAGGTGGAATAACTACATCCTGATGGGTGTAATACGAAACTACATATTCCTTTACAACTAATATTCCTTTAACCGACAGATGACTGAATAACGCTTTCActtgcctttttaaatgtaatgaagcATTTTTAACAGTTACCCGATCCCTGTTCAATGTTCAAGAGCTCTTTTGTGGCTGTAATGTGACGTTTGCATTCTTTTGCTGCTGTGGTGAGTAGTGCTTTGAATCACAAACTCTTCACTGCCATCTTCAAAGGCTTTTTCTGTAGATCCCGCTCTAAAATGCTCTTCCACATTTGTGGAAAGGGAaaggttttaatttgattttgtcaGCCGTGACACTTAAGGAAAACGGTTGTCTGTATGTGAACTGTAATTGTTGTTGGAGTGCACTTTTTTCAATGTCTTGCCACAAAAAGTCCATCTTGCTTTTTATTCCTTTGTCTGTGTTATTGATTTGGCCCTATGTTCCCCAGTGCTAAAGCCTCCAGCAAAACTATTTCATATCTTCATTGTAGAACCGCAGTGCCTGATGAGGTTTTCTGTAATAGTGTTTAGCATCTTGGCAGTTATTGCTGTGACCATGGAAACAGTTGAGTTGTGTCTCTTGGTTTCTATATTGTTTGCGGAGGTCTTTCAGTATGTATGAACTAAGCAATGGGCTGAGCATGGACTAAATTGCTAGTGGTACACAGGACACCCAAGAATTACagtaaataattacaaacatgAAATGTGTAGGACCTatatcttttacttttttttttatatcccaGAAATGCTAGCGAATACATTTTTGATTCCATAAGCAGAaagtgtcacttttttttttttttttaattaagggcAGTGGAAGATGCAGGCAAAACAGTAATTGAACAAAAGTGATATTTGGTTTGGGGatcctttgttttatttgtgaaacaTTCATTCTTGATTTGCATATTCTTAACCTTCATGAAATAAAGGAACTGTTCCAAGATTGTAACACTGTACATAATA

Function

symbol description
letm1 Predicted to enable calcium:proton antiporter activity. Predicted to be involved in cellular calcium ion homeostasis and protein complex oligomerization. Predicted to act upstream of or within calcium ion transport. Predicted to be located in mitochondrial inner membrane. Orthologous to human LETM1 (leucine zipper and EF-hand containing transmembrane protein 1).

NR:

description
PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial isoform X3

GO:

id name namespace
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K17800 LETM1, MDM38; LETM1 and EF-hand domain-containing protein 1, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017417 True 7199 mRNA 0.41 14 2528915 2566277

Neighbor

gene id symbol gene type direction distance location
AMCG00017414 NA coding downstream 101788 2076178 ~ 2427127 (-)
AMCG00017406 NA coding downstream 496699 2023432 ~ 2032216 (-)
AMCG00017408 pank2,LOC107391889,LOC107103406,LOC101161204 coding downstream 513353 2005759 ~ 2015562 (-)
AMCG00017407 loxl3,LOC108441751 coding downstream 535374 1985621 ~ 1993541 (-)
AMCG00017410 NA coding downstream 564351 1948160 ~ 1964564 (-)
AMCG00017425 NA coding upstream 275645 2841922 ~ 3087650 (-)
AMCG00017430 ctnna2 coding upstream 863344 3429621 ~ 3487525 (-)
AMCG00017431 ctnna2,LOC102793143,LOC107706127,LOC103137875 coding upstream 963406 3529683 ~ 3539396 (-)
AMCG00017434 ctnna2,ctnna1,LOC107594905,LOC107750356 coding upstream 1171536 3737813 ~ 3747843 (-)
AMCG00017432 ctnna2,LOC107552348,LOC103137937,LOC107706127 coding upstream 1210217 3776494 ~ 3799472 (-)
G90157 NA non-coding downstream 64656 2373110 ~ 2464259 (-)
G90139 NA non-coding downstream 243386 2285225 ~ 2285529 (-)
G90129 NA non-coding downstream 343176 2185385 ~ 2185739 (-)
G90098 NA non-coding downstream 449671 2079040 ~ 2079244 (-)
G90093 NA non-coding downstream 473552 2054839 ~ 2055363 (-)
G90221 suclg1,LOC107746879 non-coding upstream 155149 2721426 ~ 2722298 (-)
G90226 NA non-coding upstream 270242 2836519 ~ 2836798 (-)
G90243 NA non-coding upstream 372973 2939250 ~ 2939477 (-)
G90244 NA non-coding upstream 373658 2939935 ~ 2940143 (-)
G90252 NA non-coding upstream 788788 3355065 ~ 3355489 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 2177129 160054 ~ 351786 (-)
G89804 NA other downstream 2423030 105685 ~ 105885 (-)
AMCG00017418 NA other upstream 35506 2601783 ~ 2615562 (-)
AMCG00017426 NA other upstream 145025 2711302 ~ 2841894 (-)
G90400 NA other upstream 1976498 4542775 ~ 4544760 (-)
G90501 NA other upstream 2592107 5158384 ~ 5221021 (-)
G90502 NA other upstream 2656196 5222473 ~ 5223047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_04010876_04029709 LETM1 coding CI01180000 null 4010876 ~ 4030106 (+)