RNA id: AMCG00017417


Basic Information

Item Value
RNA id AMCG00017417
length 7199
RNA type mRNA
GC content 0.41
exon number 14
gene id AMCG00017417
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2528915 ~ 2566277 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCATTAAAGCGGCAGTCGAATGAGGAGAGGCAGGCATCCTCAAATGGCATTAATCCTGTTTACAAGATCCAGGTTACCATTGATGAAAACATCAAGATCATTAAGCAGGGAAAACCAAAAAGgAATGTGGTGTTCAGCGGCAGCAGTGTGACTCCAGTGTCGTTCagcacaccctcacacacagtgcacagcaGTGGCCAGCACAGCTATGTCCCAGGGGCACCGAGACTGTACTGCGGCCTGGTGGGCGCCGCTCCCCTGGGGGCTGCAGGGGTGCTGGTGAGACCCCAACATGTACCTGTACGGTGGTGGCACTGTAGCAGCCGGCTGTATGACGACTCCAAGGTGGAGAAGTCCTTGAAGAGTttaaaggacaaaaacaaaaagctggaGGAAGGGGGCCCGGTATACAGCCCCACAGTGGACCTGGAGCCGGTGAGGAAGTCCCTGGCCCAGAAGGTCGTGGATGAGATCAAGCACTACTACCATGGCTTTCGTCTGCTCTGGATTGACACCATCATCGCCGGCCGCATGCTATGGAGGATTCTGAACGGGAACGTGTTGTCACGTCGGGAACGAAGACAGTTCCTAAGGACGTGTGCAGATGTCTTTCGGCTGGTCCCTTTTCTGGTCTTCATCATTGTCCCTTTCATGGAGTTCCTGCTCCCCATAGCTCTCAAATTGTTTCCCAACATGCTGCCTTCAACCTTTGAGACCCAGTCCAAGAAGGAGGAGAGACTAAAGAAGGAGCTGAGACTGAAACTGGAGATGGCCAAATTTCTTCAGGACACCATTGAGGAGATTGCTCTGCGAAACAAGGCAGCTAAAGGGAATGTCACAGAGGAGTTCTCCACTTTCTTTCAGAAGATCAGGAACTCAGGGGAGAGGCCCAGCAATGAGGAGATCATCCGCTTCTCCAAGCTGTTTGAGGACGAGCTGACGCTGGACAACTTGACGCGGCCCCAGCTGGTGGCGCTGTGCAAACTGCTGGAGCTGCAGTCCATAGGCACCAACAACTTCCTGCGCTTCCAGATCATCATGAAGCTCCGGGCCATCCGCGCTGATGACAAGGCACGTGCTGTAGAGCATCACACAAGGCTGaaggtcagtgtgtgtttatctaTACAGTTGATATCGGATGAGGGCGTGGACAGTCTGAATGTGAAGGAGCTGCAAGCGGCCTGTCGGGCTCGGGGCATGAGAGCGCTGGGCGTGACGGAGGAGAGACTCCGAGAGCAGCTCAGACAGTGGCTAGAGCTCCACCTGAACCAGCAGATCCCCACCTCCCTGCTGCTCCTGTCCAGAGCCATGTATCTGCCAGACACGCTGTCTCCCGCAGACCAGCTCACCACCACCCTGCAGACCTTACCCGAGATTGTGGCCAAGGAGGCCCAGGTGAAGGTGGCAGAGATGGAGGGCTTCAAGGTAGACAACAAGACGAAGCTGGAGACCACGCTGGAAGAGGAGGCTGCCATCAGAAAGGAGAACCGCGAGCGTGAGATGGAGCGCCTGGCCGACGCTGCGGAGAAGGCCAAGGAGGTGCTGCAGGTGACTGCACAGAAGGAAGTGGAGTCCGCAGTGGACATGGAGGCAGCAGCTGTCAGTGTCAAGAAAAGCCAAATTGCCATGGATACTGAACAAGAGCTTGCCAACGTTGACCTTGCAATTCACTCTGAGACATTGAAGGACACAGCCCCTGTCTTGGAAGGGATTAAGGGAGAGGAGATCACCAAAGAGGAGATTGACATGCTGAGTGATGCCTGCACCAAACTGAAGGAGCAGAAGAAGCTGCTTACCAAAGAGAAGGAAGAGCTGGAGGACCTGAAGGACGACGTCCAGGAGTACAATGAGGACCTGGAGGAGATTAAGAAGGAGCTGTCCAAGACGGGCCAGGAGAAGGTGGTGCAGGAGTCCAAGGCCAGCATGCGGCTCTCGAAAAGGGTGAACCGCATGATCGGGCGCATTGACAAAATCATCACTGAGCTGGAGACGGACAAAAAGGTGCTGGATGGACAGCTCGACAGCGGGACCACTCCGCCAATTGGGGAGAACCTCATCAGCATCACTGAGCTGATCAGTGTGATGCGGCAGATCCAAAACATCCCTGAGCACAAGTTGCAGAGCATCGCCGATGCGCTGGACGAGAACAAAGACGGCAAGATCGACATCGATGACGTCATCAAGGTGGTGGAGCTGATCGACAAGGAAGATATTGACATCTCGACCAACCAGGTGGCAGATATCATGGTGATGCTGCAGAAGGAGGAGAAGCtggtggagaaggagaaggcAAAGGAGAAGGCGGAGAAGGAGCAGGCCGCCGAAGTGCAGAACTGAGTCCCTCCAGGAGGCACCACTCCATTCACAGGAAAGACATGAGAAACTAGCGGGCAAATTGGCTGTATGCATGGATGTCTGCATCGAGAGATTTAGAAATGACTGTTTCTAACTAGTTTCTCCATCTCTTTCTGATTGTAAAACTGAGTGACTAAGTTagggcagaggaggaggagatggtctacccaagaacaacaacagcaacaagaaaaacatgctATTTTTGAGCTCTGAAAAAGCTtataaaagaaattaaatatcatTTACTTTAGCGAAAATGAGTCTGAAGTAATTTCCTTATGGTTGTAaatcttgttttccttttctgggggaaaaaaatgaaattcccCAATATAGGGGCTAACCACTAAATTAAAGGCCTGACTTTCTCGTTTTCATTGCACaaatttaataagaaaatatcTACTGGTTGTTTGAGGTGAAGctgtttgccttttattttaataaagacatagtcattataatataatatagaaaTGGGattcagattttagttttttcctttttcttgcaCATTAAATTTTCATTACTGTCATTCCATAGGCATGGAAGTTGTTATTATtccatcattatttatttatttttttaacaggcaAGTCTCTTTGTAAACTGTATCattatattgaatgttttgttgTGATGTGGTAAAcataaatgtcattgttttataCCTATCAACATATagtcaataaaaaacattatttacgGATATaactcaaaaacaaatatattgaacaGGATCGTCAAATGAGCGTGTTTAGAAagtttataatatgtatattgaaCAGCTCCTTTACATATGAGAatgcagttattattaatactgaatACTTATAATTACCAAAGGTATGACAATAATTCAAAGATTTAATAGTGTGTTTACCTGTGCATGATAGCTCTATGTGTGGTTAATATGAATGATTTGCCTAAAACCTTACATATGCATAGTTGGTTTTGAAGATCTGACCAAAAATTGGATCCGTTTTTTTCTCCAGGGCTTTAAGATCACTTACTTGATGCTggctttgaaaattaaaatgtcatcttCTTGGAGAAGAACAATCTTTCAAGAGCTGGTATGCAGATCCCTTTAAAGAACTGTTTGAAAGATGATCATTCACAGAATAACATTGCTATTAAATCTGTTACTCCTGTTCACAGAGAAATGACAAAAGATGGTATCCACTAGGATGACAGTTTGTTTCCTATATCTTATGAggttttattagtagtattaatcTAGTGAAATAATTGAAGACTTGAAATGGTAAAACTGACAGCTTTAGGCATAACAGTAATACTAAGTCTGCAAATTGTTACTTGAACCACTATAAAGGAGACCTAAAGAATGCAATTGTGAATATGAATCTCACAATGGAAAATGTCATACCCAATGTTTTTGAACCTACTGTACAAATACATCTGTGGTGAggattgtattaaatatgtagTACATTTTTTGTAGTGGTACATGAGGCTTTCTAGTGGAAACAAATGTGCATCTACTTTGTATGGGAGAGGTATTTATATGTGGGTTCTTGTTTACTGGGGTGGATTCCTTGAGAGTTTTGTTGCCACTCGTGTTGAATGATCTTCTTGCAGGCACTGCTCTTCACTGCTCCACATTATATCATAGTTCATGATAATTAGATGAGCTTTCTTGATATGCCTTCACAATATTGCTGTGATCACTGGTGCACTACTACCTATAAGCTGCTCTGTGCTTAACAATTTGCCTATGTATAATTGCACTATGAAATTACATTCAGCTTCTTCAACTTTTGTTTGGACTCAGGTATCAATGTGTCAAAGTACATTGTAGGGAACTCTGATGAGGGCTCACTAGAGCATGGAGGATTTCCATTTGGAAACCATGCAGTGCAGGCTTTTGGGACCTCTCTGTACAGCAGACTTCCTGGGAAGCAGAGACTAACTTTGTACTGTATAACTGGAATGAAATAGGTACCAATATGTAATGTCGTAGGTTGTAGTATACCTTGAGTACAAGTAGTTCTAGGTATTTGATTGGTAGGAAtataatttgtcatttaaatgtagtacatagaaatatatatatatttttttttcttgtccttgAGAAACTGAGTTTCTCAGATTGCCGttcaaacctttttttctttttcatatgcAAATGTCAGTTACTATTGCTTTTATGTGCACTTACTTGCAGGAAGAACTGTGTCCAGTGAGACTGAGGTTTTCTGTTAGTGTCTTTGAATTCAGCACATGGCAGAGAAAGTCACAGGACCATCTCACCCTCATACAGCAGTGGTAGACCTAATGCGCAGGACTTAATGCATGTTTCTTGAGTTCATCTGAAACCTGTTCTACCCAGAATATATAGCTTTTGTCTATATACATACGTTTTCATTGGTCCgtgacatttgaaataaagtgcagtttgaaaaattgaaataaaatgtctgaatgCAATTGTCATTGTGTGGTTGCAGGTGAAATGGCAGCAGCACATGCTATTGAAATGTGCAGTGCTCTGAAACAGATTGGTGTGTAAATTTATGgtcatttttaaactatttttctaAAAAAGAATTATATCATCCTCCTCCAGCCATGGAGTTTGCAGACCTTCACACtggtatacatttcaaattgtattttttatttatttgggtacactcattaaatgttataaacacatacagctctggaacaaattgagaccacttaacattgatttctgaacttggagtggtctctttttccagaactgtatatagattatctgattaaattaacatttttagctttatattttttaatgcccCTTTAAAccagttattttacattttccattttgcctTGTTTGAGCTGAACCACCATAGAGAAGCTGAGAGCAATCCCCTTTATCTCACAGAACAGTTGCACTTAGTACAGTATCTCAGGAAGACGGGTGCAGGTCAGAGATGTAGGAAGAAGTAATGGTCACTTTAAGGTCTGCTCTATAGTAGAAAGGTCCACTTCTCAGCATGGAAAACCAAACACTGGGGAATTCAGTTAAACATGGAAACAaggtcattatatatatatatatatatatatatagcatttaaATGTGTAGGAGAATTcaaagattgtttttattaacataaagGAAACCCCCTGTTGTGCACATTGGGTTTATCATGAAAGATTCTCCCCATTACTTCTGAAACTCAGTAAGTGCACAAATAAGCTTAAAATTTGGCTTTGGGTTTTGAGAAAATCATGCTATATGAATGCATTGTTTGTGAAGTGTCTCCACGGTTGACATTTGTTACTTAGCTTTTGAAATGCTGCTTGTAGCTTTAGCTGTTAGGTTATGTCTCTGTGGCCATGGTTGGTACAttgaatatttttgttcagcaaatcaggtttaaaaatgtattattttaactatcaaACAAGAACAGTAAACAATTTGCATTCATTGAATGCTGCTTGATTTATTGTCGTTGTGTGGATAATCTCACTCTTAGTGTAAAACccaataaacaaaatgcttggTTAGAGAGGccttgactgattgattgaataCATGGTCAAATGGGTGTAAAGTAAAAGTGGAGagaggaataaaaaacaacttcAAACAATAAATTGATTTCAAATCTGATGTGGAATATCTATAATTCAGGGCATGTCGGTGATTGTTCTCTATGTTTGCATGTGTAATTACAGTACAGATAGTTGTGGTGGTATAGTAACTAACGGCTACTAAATTAGCTAAATGATTGAGGCAAACCAAATAAATCTCCAGtcccagaaacaaagaaaaacatttgcaaaaggcTTAACATTTGGTATGTTAAACCTAGGTGGAATAACTACATCCTGATGGGTGTAATACGAAACTACATATTCCTTTACAACTAATATTCCTTTAACCGACAGATGACTGAATAACGCTTTCActtgcctttttaaatgtaatgaagcATTTTTAACAGTTACCCGATCCCTGTTCAATGTTCAAGAGCTCTTTTGTGGCTGTAATGTGACGTTTGCATTCTTTTGCTGCTGTGGTGAGTAGTGCTTTGAATCACAAACTCTTCACTGCCATCTTCAAAGGCTTTTTCTGTAGATCCCGCTCTAAAATGCTCTTCCACATTTGTGGAAAGGGAaaggttttaatttgattttgtcaGCCGTGACACTTAAGGAAAACGGTTGTCTGTATGTGAACTGTAATTGTTGTTGGAGTGCACTTTTTTCAATGTCTTGCCACAAAAAGTCCATCTTGCTTTTTATTCCTTTGTCTGTGTTATTGATTTGGCCCTATGTTCCCCAGTGCTAAAGCCTCCAGCAAAACTATTTCATATCTTCATTGTAGAACCGCAGTGCCTGATGAGGTTTTCTGTAATAGTGTTTAGCATCTTGGCAGTTATTGCTGTGACCATGGAAACAGTTGAGTTGTGTCTCTTGGTTTCTATATTGTTTGCGGAGGTCTTTCAGTATGTATGAACTAAGCAATGGGCTGAGCATGGACTAAATTGCTAGTGGTACACAGGACACCCAAGAATTACagtaaataattacaaacatgAAATGTGTAGGACCTatatcttttacttttttttttatatcccaGAAATGCTAGCGAATACATTTTTGATTCCATAAGCAGAaagtgtcacttttttttttttttttaattaagggcAGTGGAAGATGCAGGCAAAACAGTAATTGAACAAAAGTGATATTTGGTTTGGGGatcctttgttttatttgtgaaacaTTCATTCTTGATTTGCATATTCTTAACCTTCATGAAATAAAGGAACTGTTCCAAGATTGTAACACTGTACATAATA

Function

GO:

id name namespace
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K17800 LETM1, MDM38; LETM1 and EF-hand domain-containing protein 1, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112428 lncRNA downstream 64656 2373110 ~ 2464259 (-) True G90157
TU112399 lncRNA downstream 243386 2285225 ~ 2285529 (-) True G90139
TU112389 lncRNA downstream 343176 2185385 ~ 2185739 (-) True G90129
TU112357 lncRNA downstream 449671 2079040 ~ 2079244 (-) True G90098
TU112352 lncRNA downstream 473552 2054839 ~ 2055363 (-) True G90093
TU112503 lncRNA upstream 155149 2721426 ~ 2722298 (-) True G90221
TU112506 lncRNA upstream 158907 2725184 ~ 2728350 (-) True AMCG00017426
TU112509 lncRNA upstream 270242 2836519 ~ 2836798 (-) True G90226
TU112527 lncRNA upstream 372973 2939250 ~ 2939477 (-) True G90243
TU112528 lncRNA upstream 373658 2939935 ~ 2940143 (-) True G90244
AMCG00017414 mRNA downstream 101788 2076178 ~ 2427127 (-) True AMCG00017414
AMCG00017406 mRNA downstream 496699 2023432 ~ 2032216 (-) True AMCG00017406
AMCG00017408 mRNA downstream 513353 2005759 ~ 2015562 (-) True AMCG00017408
AMCG00017407 mRNA downstream 535374 1985621 ~ 1993541 (-) True AMCG00017407
AMCG00017410 mRNA downstream 564351 1948160 ~ 1964564 (-) True AMCG00017410
AMCG00017418 mRNA upstream 35506 2601783 ~ 2615562 (-) True AMCG00017418
AMCG00017426 mRNA upstream 145025 2711302 ~ 2841894 (-) False AMCG00017426
AMCG00017425 mRNA upstream 275645 2841922 ~ 3087650 (-) True AMCG00017425
AMCG00017430 mRNA upstream 863344 3429621 ~ 3487525 (-) True AMCG00017430
AMCG00017431 mRNA upstream 963406 3529683 ~ 3539396 (-) True AMCG00017431
TU112073 other downstream 2177129 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 2423030 105685 ~ 105885 (-) True G89804
TU112472 other upstream 42412 2608689 ~ 2615524 (-) False AMCG00017418
TU112697 other upstream 1976498 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 2592107 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 2592107 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 2656196 5222473 ~ 5223047 (-) True G90502

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011558 False 2738 mRNA 0.49 14 NC_007124.7 13033837 ~ 13099800 (+)
grasscarp (Ctenopharyngodon idella) CI01180000_04010876_04029709.mRNA True 2880 mRNA 0.49 18 CI01180000 4010876 ~ 4030106 (+)