RNA id: CI01180000_04010876_04029709.mRNA


Basic Information

Item Value
RNA id CI01180000_04010876_04029709.mRNA
length 2880
RNA type mRNA
GC content 0.49
exon number 18
gene id CI01180000_04010876_04029709
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 4010876 ~ 4030106 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAAAGTTGTCAGAAGGCGTATGCTTTAACTGCAGTGCACTGCGGTTAGCCACAAACAGCAGTCATGGTCTTCTTGGAGGCAGCATGTGGCCGCATGCATCATCTGTCCTGTACCTTGACAGTTCATCAGCGCTTCAGCACCGCTTGTCCAGTTCACCTCGCCTTTACTGTGCCATCTTTGTACCTGACCCTGCCCTGCCTGTCCACACCCACTCCACATATCCCAGGACGCTAACCTGGCCACAGAATACCCCAGTCCGGTGGGTACATACCACAGGCCGTCTCCATGATGATTCAAAGGTGGAGCGTTCTTTGCGTACACTGAAAGATAAAAATAAAAAGCTTGAAGAGGGAGGACCGGTGTACAGTCCGACAGTGGATGCAGAACCTGTGCGACGGACAATACGTCAACGCGTGGTTGACGAAGTGAAGCACTACTATCACGGGTTCCGCTTATTGTGGATAGACACGACCATCGCTGTGCGGATGCTCTGGAGGGTGCTAAACGGACACATTCTGTCACGCCGAGAGAGGAGACAGTTCCTGAGGACGTGTGCAGATGTCTTCCGGCTTGTGCCCTTTTTGGTCTTCATCATCGTTCCATTTATGGAGTTTCTGCTTCCTATTGCAGTAAAGCTTTTCCCAAACATGTTGCCGTCCACCTTTGAGACACAGTCCAAAAAGGAGGAAAGGCTGAAGAAGGAGCTGAGAGTGAAGTTAGAGATGGCCAAGTTCTTGCAGGACACAATTGAAGAGATTGCACTAAGAAACAAAGCAGCTAAAGGCAACGTGACCGAGGAGTTCTCCACTTTCTTTCAGAAGGCTAGAGAGCCACCACAGAGCCAGGTCTTACGTCACTGTATACGTCTCATCTTTCCCAGCAACACTATTGCGATTCGCGACTCAGGAGAGAGACCCAGTAATGAGCAGATCATACGTTTCTCTAAGTTGTTTGAGGATGAACTGACCTTAGATAATCTGACACGTCCGCAACTGGTGGCCCTGTGCAAGCTGCTGGAGCTGCAGTCCATTGGCACCAACAATTTCTTGCGCTTCCAGCTCATCATGAAACTCAGAGCCATCCGTGCAGACGACAAGCTGATAGCAGAGGAGGGAGTGGACAGTCTGAATGTGAACGAGCTGCAGGCAGCATGTCGTGTGAGAGGGATGAGAGCTCTGGGAGTGACGGAGGAGAGACTAAGAGAGCAGCTTAAACAGTGGTTGGAGCTTCACCTCAATCAACACATCCCCACATCTCTGCTGCTGCTGTCCCGAGCCATGTTCCTGCCAGACACACTGTCCCCTGCAGACCAGCTTAAAACCACACTACAGAACCTGCCAGAGATCATGGCTAAAGAAGCGCAGATGAAGGTGGCAGAGCTGGACTTCTCTAAAGTGGATAACAAGACCAAGCTGGAGGCCACGCTACAGGAAGAGGCAGCCATCCGAGAGGAAAACAGAGAGCGGGAGCTGGAGAGACTGGCTGATGCTGCAGAGAAAGCGAAGGAACTGGCTGCACAGGAGGGTGAGATGGTGGCGTCGGAAGCAGAACGACGTGTGGATGCAGAACATGCCCTCTCCAATGTAGACGTGGCCATCCATTCAGAAACACTACGAGATACTGCACCAGTGCTGGAGGGTATTAAGTTCAAGCAGTGGCAGAGATATCTGCGCATTCAGGGGGAGGAAATCACTAAAGAGGAGATTGACATGCTGAATGATGCCTGCACCAAACTGAAGGAGCAGAAGAATCTCCTCACCAAAGAGAAAGAGGAGCTGGAGGACCTAAAGGATGATGTGCAGGAGTACAGTGAGGACCTGGAGGAGATAAAGCGAGAGCTATCCAAGACGGGACAGGAGAAGGTGGTGGAGGAGTCTAAGGCAAGTCAACGTCTGTCAAAGCGCGTCAACCGCATGATTGGCAGAATGGATAAGATCATCACTGAGCTGGAGAAGGACAAGGTTGTGCTAGACGGACAGATGGACAGCAGCACCACACCACCAATTGGATTGTTCTTTGAGAAACATAGTGACTTGCCAAGGGAGAATCTGATAAGCATCAACGAGCTTATTACAGTCATGAAGCAGATCCAGAGCATTCCTGAAGACAAGCTGCTCAGAATCGCAGACGCTCTCGACGAAAACAAGGATGGCAAGATAGACATCGATGATGTCCTCAAGGTGGTAGAGCTGATCGATAAGGAGGACATCGATATCTCCACCAACCAGGTGGCAGAGATCATGTTCACAATCTATTTTCATCAGATTCTTGAATGTTGCGTACCTGGGAACCTGAAAGGAAAAAGATGGAGGTCAGTGCAGACAGAATCAGGGTATAGCTCAGCCTTCCAGTCAGTATGTGGCCTGGATGATGGCTTATTCCTTACATGGAGAGAGCAGCAGCAGTTGTTCCCATTGCAGAGCACCTACACTAACTGGAATGTGTCGATCAGCACGAAACTCTCACGCTTACTGGTGGCGTGAGTCTGGTAGCGTAGTTTCACAGGGCACATAACGCAGGGAATACATCATCCTAACCCTAAACATGTCATGGCGAGGGACCAGCATGTCTAACCTCAAAGCACTGTTCCTGTGCTGTCTCAGAGTGTCTAGGTGCCTGTTTCACATTGTGTCCCTTAAAGGGATAGTTCACCAAAAAAAGAAAATTTGGTCATTATTTGACCACCCTCATGTCGTTCCTAACCGGTATGAGTTTTTTATTACGTAGAACACAAAATGAGATGTTTAGCAAAATGTTCTCGCTGCTCTTTTCCATGAGATAAAAAAGGTCATAAATGTTTCTAACAACATGAGGGATAATAAATGATGACAATTTTTATTTTCGGGTGAACTATGCAGTACTTACCTAGGGGACCCTTA

Function

GO:

id name namespace
GO:0043022 ribosome binding molecular_function

KEGG:

id description
K17800 LETM1, MDM38; LETM1 and EF-hand domain-containing protein 1, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU801788 lncRNA upstream 29625 3981011 ~ 3981251 (+) True G680869
TU801783 lncRNA upstream 128270 3882268 ~ 3882606 (+) True G680864
TU801775 lncRNA upstream 142422 3868061 ~ 3868454 (+) True G680856
TU801685 lncRNA upstream 166297 3843859 ~ 3844579 (+) True G680768
TU801639 lncRNA upstream 180320 3828332 ~ 3830556 (+) True G680728
TU801798 lncRNA downstream 32059 4062165 ~ 4062472 (+) True G680879
TU801801 lncRNA downstream 34355 4064461 ~ 4064828 (+) True G680882
TU801803 lncRNA downstream 36088 4066194 ~ 4066401 (+) True G680884
TU801805 lncRNA downstream 37857 4067963 ~ 4068320 (+) True G680886
TU801808 lncRNA downstream 42587 4072693 ~ 4072945 (+) True G680889
CI01180000_03906328_03978950.mRNA mRNA upstream 31028 3906328 ~ 3979848 (+) True CI01180000_03906328_03978950
CI01180000_03886676_03894240.mRNA mRNA upstream 116262 3885861 ~ 3894614 (+) True CI01180000_03886676_03894240
CI01180000_03874309_03876138.mRNA mRNA upstream 134052 3874211 ~ 3876824 (+) True CI01180000_03874309_03876138
CI01180000_03835051_03839911.mRNA mRNA upstream 170137 3834488 ~ 3840739 (+) True CI01180000_03835051_03839911
CI01180000_03798341_03812950.mRNA mRNA upstream 197825 3797774 ~ 3813051 (+) True CI01180000_03798341_03812950
CI01180000_04249587_04251719.mRNA mRNA downstream 219346 4249452 ~ 4252451 (+) True CI01180000_04249587_04251719
CI01180000_04292374_04295052.mRNA mRNA downstream 261635 4291741 ~ 4295131 (+) True CI01180000_04292374_04295052
CI01180000_04302604_04322081.mRNA mRNA downstream 271722 4301828 ~ 4322315 (+) False CI01180000_04302604_04322081
CI01180000_04375200_04414909.mRNA mRNA downstream 345094 4375200 ~ 4415038 (+) True CI01180000_04375200_04414909
CI01180000_04417522_04418042.mRNA mRNA downstream 387416 4417522 ~ 4419271 (+) True CI01180000_04417522_04418042
TU801653 other upstream 226435 3765691 ~ 3784441 (+) True G680736
TU801631 other upstream 438479 3553277 ~ 3563250 (+) False G680723
TU801630 other upstream 438479 3553562 ~ 3563250 (+) True G680723
TU801022 other upstream 1315440 2694407 ~ 2695436 (+) True G680192
TU801024 other upstream 1316642 2693355 ~ 2694234 (+) True G680192
TU802064 other downstream 753199 4783305 ~ 4785631 (+) True G681137
TU802202 other downstream 1340304 5370410 ~ 5373762 (+) True G681268
TU802553 other downstream 2442929 6473035 ~ 6478999 (+) True G681592
TU802663 other downstream 2602802 6632908 ~ 6634989 (+) True G681686
TU802641 other downstream 2625740 6655846 ~ 6659546 (+) True G681667

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011558 False 2738 mRNA 0.49 14 NC_007124.7 13033837 ~ 13099800 (+)
bowfin (Amia calva) AMCG00017417 True 7199 mRNA 0.41 14 CM030131.1 2528915 ~ 2566277 (-)