G680728


Basic Information

Item Value
gene id G680728
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3828332 ~ 3830556 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU801639
TGCTCTTTCTTTAAAGTGAATGACCCTTGAATTCAACATTTTATTATATAAAGCAAAGACATTCAGTCAAGTGTGGCTTAAGTGTCCAAATACTTCTTGAATACACACAACATATATACACACCCCAGCTGTGTTGACAGCAGCTCCATAACCAGTAGCGATGCCACAGCCGAGCAGACACACACGGTCGAGTGGAGCATCATCGTGAATCTTTGCCACAGCAATCTGGTTCATGACAGTGTACTCAGAGAAGGTACTGGTGCCCATGAACTGCAAGATGGGCTGACCACGACAAGTAAAACGTGTTGTGGGATCAGACATAATGTCGTAATTTTTACTTGTCCTGCCAGCTGCGGTCACACAGGTTTGTTTTTGGACACTTGCAGAATCTGCATTCTCCACACTGAGAGATGAAGAGTGGAATGACCTTATCACCTGTTCACCACAATACACAGATGTGGGGCGACTTCTATTTCCTCCATCATCAGGGGAGCACTGGGCTCCCAGGCAACAGCAGCCCGACATTTGATCACCTTTGGCACAAAGAAGAGATTGGTTCAGCATGTTTTATAGATATTTAATGGTTGACTACTGATGTTTATATAACTGCTGCACTTGAGCGTTTGCATGATCTACACTCTCTAACCGCTGTTGGAGGTTGTCCAGCTGTTTGGCTTAAGCCAATGGAAACATAAAACATCTGTTTTTAGAGCCACAAATAACTGGGATTTCACAATCACAGATAAATATTAACTCAATAAAATTGCCAGAGCACTTTTTTGTAGTTTTAGCGTGATTTACTAGTTTCCACTTGACAGAAAACTGGCAGAATGACCAATGAAAACCATGAGAAAAAAAGTTGAATTCTTTTTGAAAAACATTTGAGGGAAAAAAAAAAAAAATCTTACATTTGTCACCTTAGTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU801639 True 925 lncRNA 0.41 3 3828332 3830556

Neighbor

gene id symbol gene type direction distance location
CI01180000_03798341_03812950 METAP1, AMPM1 coding upstream 15281 3797774 ~ 3813051 (+)
CI01180000_03757478_03765413 RRH coding upstream 62666 3755690 ~ 3765666 (+)
CI01180000_03741295_03752345 DAPP1 coding upstream 75692 3740496 ~ 3752640 (+)
CI01180000_03701881_03732121 ATP10D coding upstream 96209 3701469 ~ 3732123 (+)
CI01180000_03663974_03689344 GABRB1 coding upstream 138860 3663436 ~ 3689472 (+)
CI01180000_03835051_03839911 EIF4E, EIF4EA, EIF4EB coding downstream 3932 3834488 ~ 3840739 (+)
CI01180000_03874309_03876138 LINGO2B, LINGO2 coding downstream 43655 3874211 ~ 3876824 (+)
CI01180000_03886676_03894240 C22H9ORF72, CLG15H9ORF72, CSGR16H9ORF72, C3H9ORF72, CUNH9ORF72, C1H9ORF72, CLG4H9ORF72 coding downstream 55305 3885861 ~ 3894614 (+)
CI01180000_03906328_03978950 KIAA1109 coding downstream 75772 3906328 ~ 3979848 (+)
CI01180000_04010876_04029709 LETM1 coding downstream 180320 4010876 ~ 4030106 (+)
G680721 NA non-coding upstream 2489 3674292 ~ 3825843 (+)
G680831 NA non-coding upstream 175316 3652738 ~ 3653016 (+)
G680825 NA non-coding upstream 186226 3641887 ~ 3642106 (+)
G680824 NA non-coding upstream 186577 3641460 ~ 3641755 (+)
G680823 NA non-coding upstream 187976 3640067 ~ 3640356 (+)
G680768 NA non-coding downstream 13303 3843859 ~ 3844579 (+)
G680856 NA non-coding downstream 37505 3868061 ~ 3868454 (+)
G680864 NA non-coding downstream 51712 3882268 ~ 3882606 (+)
G680869 NA non-coding downstream 150455 3981011 ~ 3981251 (+)
G680879 NA non-coding downstream 231609 4062165 ~ 4062472 (+)
G680736 NA other upstream 43891 3765691 ~ 3784441 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other upstream 255935 3569165 ~ 3573135 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 1132896 2689271 ~ 2693221 (+)
G679324 NA other upstream 1430972 2388867 ~ 2397360 (+)
G679076 NA other upstream 2028899 1795170 ~ 1799433 (+)
G681137 NA other downstream 952749 4783305 ~ 4785631 (+)
G681268 NA other downstream 1539854 5370410 ~ 5373762 (+)
G681592 NA other downstream 2642479 6471995 ~ 6478999 (+)
G681686 NA other downstream 2802352 6632908 ~ 6634989 (+)
G681667 NA other downstream 2825290 6655846 ~ 6659546 (+)

Expression


Co-expression Network