CI01180000_03701881_03732121 (ATP10D)


Basic Information

Item Value
gene id CI01180000_03701881_03732121
gene name ATP10D
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3701469 ~ 3732123 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_03701881_03732121.mRNA
TGTTTATATAGTCGTTTTAGGGTGGCATTTTTCAGCTTCCTCATTTCAGGTCATGTCACTCTTGCAGTATGTTCACCATAGGCTTTTCATAAAGGTGAAACCTCTTGTATTTTGGCCTGTGTGAAATATAAGCTGCTTCATTTGAAACAAATTAAACATTCCTTCCTCTTTCCATGCTATGGGGATGTGGTTATCTTGAAAATGGTATTCGCTACAGGCAGAACTTCTGCCTTTCAGCCATGCAAAGCTTGTTCAACAGGTTTCATGCTTTCAAAAGGAGAAGAAATGGAAGATTGCAAGGAGCATACTCTGTGGATTTATAGTAATTTTTGGTGTGTGTTTATGTGTGTTCAGGACGAGGGCTGTTTGTAGTGCAGACAGGGACCTCGCCATTTTGTCTTGCTGTCGTCCTCATGGAGCGGCTCCACTGGGTTCGGCACAGATGTCTGCAGCTGATATCCACAGACAGGAGGAGGGGCTGGTACTCTCCTCCTTCATCACTTCCACCTAAGAGCAGTCTAGACACTCAAGACCCTCTGGTTCAGCGGCTCAGTGGAAAGAGAAGAGTGGTGGTATCACGATGTGGTCCACACCATGCAGAGTATCACAGCTTCTCCAAGGGCTTTCAAAACAACAGCATCCGGACCACCAAGTATACCCTCCTCAGTTTCATACCCATGAATCTGTTCCAGCAGTTTCACAGAGCGGCAAATCTGTACTTCCTGTTCTTGGTGTTGCTGAATTGGGTCCCAGTGGTGGAAGCATTTCAGAAGGAGATTACCATGATTCCCCTAGCTGTGGTGCTCACCGTCATTGCCTTCAAAGATGCCATGGAGGATTACAGACGTTACCGCTATGACAAGAGAATAAACAACATACCGACGCATGTCTACGGCAGGTATGTGTTCATCCCTGTTGATCTGACTGTCTTCCAGGAGCAGAGGAGTCCGGCTGCCATGATTCAGCAGTTGGACATGGATCAAGGTGGCACGGCAAAAGATCCGGCCAAAAACAGAAGGCTTGTCATGCCAAGTTGGACTGAAGATGAAGAGGTAAAGGAATTACAGCAGTCGTACTGCAGGAATAAGGTCCGGACGACCAAGTACACCTTCCTGTCCTTCATCCCCAAGAATCTTTTCGAGCAACTTCACCGTTTTGCCAATGTATACTTCGTCTTCTTGGGTGCATTGAACTTTGTGCCTATTGTAAATGCGTTCCAGCCAGAGATCTCTATCATTCCTATTGTCTTTGTGATGTCCATAACTGCTGTTAAAGACCTTTGGGAGGACCAACGGCGGAAGAAGTCTGACCAAAAGGTCAATAACTGCTTATGTGATGTGTATGACAGGAAGCAACAGCGGTATGTGGAACGGCGTTGGGCGGAGGTGTGTGTCGGTGATCTGGTCCGTCTCTGCTGTAATGAGATCATTCCTGCTGACATGGTGCTGCTGCACTCGTCTGATCCAAACGGAGTGTGTCACATCGAGACTGCCAACCTGGATGGTGAAACCAACCTCAAACAGAGGCAGGTGGTCCGTGACCTGCCACAACAGGGATCCGAGTTTATTCCAGAAAACTACAGCAGTCGCATTGAGTGTGAAAATCCCAACAATGACCTGAGACGGTTCAGAGGCTTCAGGGAACATCCTGGTAAAGTGCGGGTTGGACTCCACAGTGAAAACCTGCTCCTGAGGAGCTGCACTGTGAGGAACACGGAGACTGTGATTGGCATTGTAGTCTATGCAGGTCATGAGACAAAAGCGATGCAGAATAACAGTGGGCCGCGCTACAAAAGAAGTAAACTGGAGCGCAGACTCAACATGGACGTCCTCTGGAGTGTCGCTCTATTGCTGCTCATGTGCTTTATTGCTGCTGTAGGTCATGGTGTTTGGTTGAGTGGGCTACAGAATACTATCTACATAATTCCTGATGACACGCACCCTGCGCTCGCTTCTTTTTACATGTTTTGGACCATGATCATTGTTCTGCAGGTGCTGATTCCCATCTCCCTCTATGTGTCGATAGAGATTGTGAAGCTGGGACAGGTATATTTTATTCAGAATGATTTAGATCTGTATAACCCAGTACTGGACACAGGAGTGCAGTGCAGAGCGCTGAACATCACAGAAGATCTTGGACAGATTCAGTACCTGTTCTCCGACAAGACGGGAACCCTCACAGAGAACCGCATGCTGTTCCGCCGCTGCACTGTTGCAGGAACCGAGTACCCTCACCATGAGAATGCGATTTCTCTGGAACAGTATGAGGCGCAGGGCCTTGGCGACGCAGATCACTCTCTCACCCTGAGGTCACGAGCTAGCAGGAAGTCACTGAGCTGTAAATCGCTCAGCTGCAACCGGAGTTCAGTGTCCCTCAATACCCTCACTGCAGAGTCTGACACGCACTCAGTCCATGATACGCTCCGCAGACACACACCTGGAGCCTTCAGCAGCACCATGGAATGTGCTGTTGTTCCAGACCCTCAGCTTCAGGTGAAGCTGAGCTCACTGTCATCCCCCATGCGTTCCTCTCTCCGACAAGAAGCTGCTGAAATCTCTCAGATCCTAGACTTCTTTCTCGCCCTCACTGTCTGCAACACCGTAGTCGTTTCCTCACCCACTCAGCCAAGACATGTGGTTCAGATGCCTGTGGTTCGCACACCCCTGCGCTCTCTAGAGGAGATGAAGGCCATGTTTCAGAAGCTGAGTCTGCCTCGCTTTCCCTATTCACTTAATCAAAACACAGACACTCCTCCCAGCCTAACCAAGAAACTCTTCGCCCGGGGTCGTTCAGCTTCCTACTTCCCTAACAGCAACCCGCAAACACCCATCAAGATCCCACAGTCACCCATCACGCCTTCTGGCACCCCTTCAAGCACTCCGTCCAACCCTGTGACTCCTGCACTATTGTCCAGTGGGGCGTGGGGTGAGAACGTGGAAGACAAACAGCAGGCCAAAGATAACTCTGCTGATGAGAGTGAGAGCGATGATGAGGATGAGGCAGAAGAGTTGCTGTACGAAGCGGAGAGCCCGGATGAGGCGGCATTGGTGCAAGCAGCAAAGGCTTATGGATGCACTCTGCTGGGCCGGTCCCCAGAGCAAGTCCTCGTGGCTGTTCCAGGCACAGGGCCACTGTCCATCCCTCTGCTACACGTACTCCCATTTCATTCTGCCCGCAAGAGGATGTCTGTGGTGGTGCGCCATCCCCTCACTGGAGAGGTTGTAGTTTACACTAAAGGAGCTGATAACGTCATTATGGAGCTGGCTGAAGAAGGTGCAGCTGAAGATGGTTTCGCTAGGGAAGTTATGGAGCGGACGCAGAAACACCTGGACCAGTATGCAAGAGAGGGACTGCGCACTCTCTGTGTTGCTAAAAAGGTGTTGGAAGAGCAGGAATACAAAGCCTGGTTGAAGAGACATGAGTATGCAGAAACCAGCATTGAAAACAGAGAAGAGCTTCTGCTCGAATCTGCCGAGAGACTGGAAACTAATCTCACATTATTGGGGGCGACGGGTATAGTAGACCGCCTGCAGGAGGAAGTGCCTGAGACCATTGAGGCTCTGCAGGAAGCTAAGATTAAAGTATGGGTCCTCACAGGGGACAAACAAGAGACGGCTATTAATATTGCTTTTGCTTGCAAACTCCTCAGACCCACAGACCACATACTGATGGCCAATTGTGACAGCAAGGAGGCTTGTGAGGCTCAATTTCATGAGTTACAACATGAGATCAGACAGGTCACAAAGGGAGGCGCATCTGAAGATAATTGTAGCTCTGACTGTGTGTTGGTCATTGATGGGCGTACGCTGGACTATGCTCTGCAGAAGGAGTTACAGGGGTCGTTCCTGGAACTCGCATGCTGCTGTCGCTCAGTCATATGCTGCAGATCCACCCCCCTGCAGAAGAGTCAGGTGGTACGGCTCGTCAGAGATCAGCTGAAGGTCATGACCCTGGCTATAGGTGATGGAGCCAATGATGTCAGTATGATTCAGATGGCAGATGTTGGCATTGGCATCTCAGGCCAGGAGGGCATGCAGGCAGTGATGTCCAGTGACTTTGCCATCTCCAGATTTAAGTTCCTGAGAAAGCTAATTTTGGTTCACGGTCATTGGTGCTACACACGGTTGGCTAACATGATCCTCTATTTCTTCTACAAGAATGTGTTTTTCTGTGGCTTTTCAGGCAGCACGATGACCAACTCGTGGGTTTTAATCTTCTTCAACCTTCTCTTCACTTCCGTACCTCCGCTCGTATATGGCGTGCTGGACAAAGATGTGTCTGCGGAGACACTCCTAGAACTGCCTGATCTCTACAAGTCTGGACAAAACTCGCAGGCCTATCTTCCATCAACGTTCTGGCTGACCATTCTCGATGCGTTTTATCAAAGCCTAGTGTGTTTCTTCATACCTTACTTGGCGTATGCAGGGTCTGATATTGGAGTATTTTCGTTTGGCTCTCCAATCAATGCCTCTGCTCTCTTCATTATCCTCCTGCATCAAGTCATAGAGAGTCGCACAGTGCATTACATGTGTGACATGCAACTCTCCTACAAACCCCTACGGCATTGAG

Function

symbol description
atp10d Predicted to enable ATPase-coupled intramembrane lipid transporter activity. Predicted to be involved in phospholipid translocation. Predicted to act upstream of or within phospholipid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human ATP10D (ATPase phospholipid transporting 10D (putative)).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01530 E7.6.2.1; phospholipid-translocating ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_03701881_03732121.mRNA True 4569 mRNA 0.50 22 3701469 3732123

Neighbor

gene id symbol gene type direction distance location
CI01180000_03663974_03689344 GABRB1 coding upstream 11997 3663436 ~ 3689472 (+)
CI01180000_03610257_03623051 GABRG1 coding upstream 77327 3609420 ~ 3624142 (+)
CI01180000_03590508_03607430 GABRA2 coding upstream 93694 3590508 ~ 3607775 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 coding upstream 129042 3569165 ~ 3573135 (+)
CI01180000_03447461_03475999 TRIM8A coding upstream 225367 3447344 ~ 3476102 (+)
CI01180000_03741295_03752345 DAPP1 coding downstream 8373 3740496 ~ 3752640 (+)
CI01180000_03757478_03765413 RRH coding downstream 23567 3755690 ~ 3765666 (+)
CI01180000_03798341_03812950 METAP1, AMPM1 coding downstream 65651 3797774 ~ 3813051 (+)
CI01180000_03835051_03839911 EIF4E, EIF4EA, EIF4EB coding downstream 102365 3834488 ~ 3840739 (+)
CI01180000_03874309_03876138 LINGO2B, LINGO2 coding downstream 142088 3874211 ~ 3876824 (+)
G680831 NA non-coding upstream 48453 3652738 ~ 3653016 (+)
G680825 NA non-coding upstream 59363 3641887 ~ 3642106 (+)
G680824 NA non-coding upstream 59714 3641460 ~ 3641755 (+)
G680823 NA non-coding upstream 61113 3640067 ~ 3640356 (+)
G680816 NA non-coding upstream 96364 3604748 ~ 3605105 (+)
G680728 NA non-coding downstream 96209 3828332 ~ 3830556 (+)
G680768 NA non-coding downstream 111736 3843859 ~ 3844579 (+)
G680856 NA non-coding downstream 135938 3868061 ~ 3868454 (+)
G680864 NA non-coding downstream 150145 3882268 ~ 3882606 (+)
G680869 NA non-coding downstream 248888 3981011 ~ 3981251 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 1006033 2689271 ~ 2693221 (+)
G679324 NA other upstream 1304109 2388867 ~ 2397360 (+)
G679076 NA other upstream 1902036 1795170 ~ 1799433 (+)
G678946 NA other upstream 2145318 1518353 ~ 1612547 (+)
G680736 NA other downstream 33568 3765691 ~ 3784441 (+)
G681137 NA other downstream 1051182 4783305 ~ 4785631 (+)
G681268 NA other downstream 1638287 5370410 ~ 5373762 (+)
G681592 NA other downstream 2740912 6471995 ~ 6478999 (+)
G681686 NA other downstream 2900785 6632908 ~ 6634989 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005850 atp10d coding NC_007124.7 CM002897.2 12389849 ~ 12452115 (+)