CI01180000_03590508_03607430 (GABRA2)


Basic Information

Item Value
gene id CI01180000_03590508_03607430
gene name GABRA2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3590508 ~ 3607775 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_03590508_03607430.mRNA
GGAATACACAGTGGATGTGTTTTTCCGTCAGCGCTGGACAGACGAGCGGCTAAAGTTTCACGGGCCGATGAACATCCTGCGTCTCAACAACCTGATGGCCAGTAAAATCTGGACCCCAGACACTTTCTTTCACAACGGCAAGAAATCTGTGGCTCACAACATGACCATGCCTAATAAACTGCTGCGCATCATGGAGAACGGCACTCTACTGTACACCATGAGGTTGACAGTGCAAGCCGAATGCCCAATGCATCTCGAGGACTTTCCAATGGATTTCCATTCCTGCCCGCTGAAATTTGGCAGCGATGCTTACACTCTGACAGAGGTGACGTATGTTTGGACACGCAATGCCACCTTATCGGTGGAAGTAGCTCCAGATGGATCTAGACTTAACCAGTATGACCTGATGGGACAGACTGTTGGAAAAGAAACCATCAAGTCCAGTACTGGTGAATATACAGTGATGACTGCCCATTTCCATCTGAAGAGGAAGATTGGATACTTTGTGATCCAGACGTACCTGCCTTGCATAATGACCGTCATCCTATCCCAAGTCTCTTTTTGGCTCAACCGAGAGTCCGTCCCTGCACGCACGGTTTTTGGTGTGACTACAGTGCTAACGATGACCACTCTGAGTATCAGCGCTCGAAACTCTTTACCAAAGGTGGCCTACGCCACAGCCATGGACTGGTTCATAGCTGTGTGCTACGCGTTTGTTTTCTCTGCTCTCATCGAGTTTGCCACTGTAAACTACTTCACCAAGCGTGGCTGGGCCTGGGATGGCAAGAGCATTGTCAATGATAAGAAAAAGGATACGTCCGTTATGAAAAAGAATAACGCATATGCAGTCGCTGTGGCAAACTACGCGCCCCACATTGCGAAGGACTCAGCCCTGCCCACCGTCTCTAAGAGCGCCACAGCGGAGCCCAGTAAACCTCAACCGGTGGCTAAAGAGGCAAAGAAGACCTTCAACAGCGTCAGCAAGATTGACCGTATGTCCCGCATCATCTTTCCAGTGCTTTTTGGCAGCTTTAACTTGGTTTATTGGGCCACATATCTCAACAGAGAACCTGTTATTAAGAACATGGTGCCCTCCCGAATGGAAAAGAGAAGAGGGGATTATTATGAGGATGAGGTTCAGGCAATCTGTCTATTTCTACTCATGGAGCTCTCCATGGTGCTGACTATAATGAATGAACAGGCAGTTAGCCTATAGGCTATATATATCAGGAAATGAATACCTTCCATAATAAGGAGCTACCTAAATGTGAAAATGTAGCCTACTATTCTTTTTATATACAGCTTTCTGCATTTTTACAATTAAAAAACAAACAAAAAACCTTTATTAACTTTCCATTTTTACAAATAATGTCCCCAAAAAGAGGTTTTGTCAAATTTAACTCACTTCTAGGAACAAATTTGTTCTCAAAATATGGTTTAAGTATAGGTAAACATTCAGTCAGTCAGTGGGTTCAAAATTTATCAGGTGGTTTATGTCTAAATGAGGCCTGTCATGTAATGAATAAGTAATGAAATTGTTTGATAAGGATAAAAAATAAC

Function

symbol description
gabra2 Enables GABA-gated chloride ion channel activity and benzodiazepine receptor activity. Involved in several processes, including chloride transmembrane transport; gamma-aminobutyric acid signaling pathway; and neurotransmitter transport. Is integral component of synaptic vesicle membrane. Part of GABA-A receptor complex. Implicated in alcohol use disorder; autistic disorder; and developmental and epileptic encephalopathy 78.

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K05175 GABRA; gamma-aminobutyric acid receptor subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_03590508_03607430.mRNA True 1560 mRNA 0.44 7 3590508 3607775

Neighbor

gene id symbol gene type direction distance location
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 coding upstream 18081 3569165 ~ 3573135 (+)
CI01180000_03447461_03475999 TRIM8A coding upstream 114406 3447344 ~ 3476102 (+)
CI01180000_03425920_03442839 SUFU.L, SUFU coding upstream 146325 3425514 ~ 3444183 (+)
CI01180000_03286578_03289266 NA coding upstream 301205 3286063 ~ 3289303 (+)
CI01180000_03280581_03284614 NA coding upstream 305887 3280348 ~ 3284621 (+)
CI01180000_03610257_03623051 GABRG1 coding downstream 1645 3609420 ~ 3624142 (+)
CI01180000_03663974_03689344 GABRB1 coding downstream 55661 3663436 ~ 3689472 (+)
CI01180000_03701881_03732121 ATP10D coding downstream 93694 3701469 ~ 3732123 (+)
CI01180000_03741295_03752345 DAPP1 coding downstream 132721 3740496 ~ 3752640 (+)
CI01180000_03757478_03765413 RRH coding downstream 147915 3755690 ~ 3765666 (+)
G680805 NA non-coding upstream 40225 3550021 ~ 3550283 (+)
G680743 NA non-coding upstream 66082 3517625 ~ 3524426 (+)
G680797 NA non-coding upstream 88160 3502109 ~ 3502348 (+)
G680767 NA non-coding upstream 129539 3449085 ~ 3460969 (+)
G680823 NA non-coding downstream 32292 3640067 ~ 3640356 (+)
G680824 NA non-coding downstream 33685 3641460 ~ 3641755 (+)
G680825 NA non-coding downstream 34112 3641887 ~ 3642106 (+)
G680831 NA non-coding downstream 44963 3652738 ~ 3653016 (+)
G680721 NA non-coding downstream 66517 3674292 ~ 3825843 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 895072 2689271 ~ 2693221 (+)
G679324 NA other upstream 1193148 2388867 ~ 2397360 (+)
G679076 NA other upstream 1791075 1795170 ~ 1799433 (+)
G678946 NA other upstream 2034357 1518353 ~ 1612547 (+)
G680736 NA other downstream 157916 3765691 ~ 3784441 (+)
G681137 NA other downstream 1175530 4783305 ~ 4785631 (+)
G681268 NA other downstream 1762635 5370410 ~ 5373762 (+)
G681592 NA other downstream 2865260 6471995 ~ 6478999 (+)
G681686 NA other downstream 3025133 6632908 ~ 6634989 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005844 gabra2a coding NC_007124.7 CM002897.2 12120664 ~ 12151350 (+)
bowfin (Amia calva) AMCG00017879 NA coding CM030131.1 CM030131.1 26677257 ~ 26708132 (-)