RNA id: TU802641


Basic Information

Item Value
RNA id TU802641
length 3401
RNA type TUCP
GC content 0.37
exon number 2
gene id G681667
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 6655846 ~ 6659546 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTAAAAGATGAGAAAAGAGGTTAAAAAAAAAAAATTGGATAACACCGCAAGTGGAACCAAAAGACAGAAAATGGAGGAAACAGGCATGCAGCAGACAGCAAATTTGCATGGAAATGTTTATTCAGTTAAACAAATGTACAACACAGCACAAAGTAATAAAAGTCCTCAAATAAAAAACAGATCCAAGCAGACACAAAAAGGCATCAAGAAAATCACCGAGCAAAACGGCATAAAAGATGAACAAAGTAATCATAACACACACCAGAAAATATAGTTAAAATGCAAAGAATAAATAAAAACAAATGGCATTTTACAGGGTAAGGAGAGAAAGTTAGTCACATCTGGCAAATCAGATGCTACAGGCAACCCAGTGAGCCGTCCTGAACACACTGCATCATAATGTCATTTGTCCGTCACGTTAGATGTCAATGTGTCATTCAGGGTTAAGCAGGTTTATACATGTGCAAAAAAAAAAATACAGCCCAGTTAATAAAGCAAGCAAATCCCTTCATCCACTTAAAACTGGGTAGTGAAAGAGAAAGACTTTGCATATACCAGCAGAGGACTTTCCTTCATTATAACGTCATCACAGTGTGCAAAATCCCATCTCCATGTAGTAAACCACCTGCCTTCCTCGCATTAAAGAGATCATTCTATAAAGCCGTCCCATAAACCCTTTTAAAAGGAAAAGCTTTTTTTTTTTTTTGGTGTCATCCAGTGTTTAGAGTAATTCAGATTGGGACATTCACTTTATGCTCTCCATATTTACAGTCTATGACTCCAATGACATTTAAATTATTTTTTAGAATGTCTAATGACATCATTCCAGACAGAAATACTGATTGTAATTCTGTCCCTGTGAGATCCTAAACTGCTCAATCCTGCACATCAAGATCTACTTCACTGCAGAGTTCTCAATTTTAATAATTTTAAAAATGTCTTCCCAAAAGTATGATTGAGCATTCCCCTTTCCCAGTTTTCAAACCATATAGTCATTCAAGTTGCTATTCCAGTGTATAATGTTTAACGGTGATGGTGTCATATTCGCCTACCCATTGTTCAGTCCGAAATGGGAAGGTTTGAGATGTTGGAAAGGGGAGGTTTGGTCTGAAAATAGGGATGGAAGTGGTGATAGTTACCCAGGATTTTTGGGTTCGTTTTCTCGTAAGCCTCCTCCTTTGAGCTTGCGGACCAGTTTCTCACTGCTGCGTCGGATAGAGGCCCGCAGTTTACTAAAGGAACCGCTGCGCTTCAATGAGCCCGAGCCGTCCTGCCAACAGAAAGGCTGCAGCATTAAAACCACACATACTTATTCACATACTGCACATTAGTGAAAGAGGGCACTGTCCTTTGTCACAAGCTCATCCTCAAACACACTCAAGCACAATGATCACTTACCTGGATCTGGAAATGTTATGGTTATGTTAGTTTAAAAGGGATAATTCACCCGAAAAAGAAAATTCTGTCATAAATTACTCACCCTCATGTCATTCTAAGTCATATAGTTACATGACGAACATATAAAAGGTTCGGTTGAGCTTCTGTTAATGTTCGCTGATTAATGGTTATATGTAAATAAAAGCCAAAATTCAATATGTTCATCATATAAAGTGATCAAGTCTCTTCAGAATATTTGGACTAAACCACTCAATTCATATGGATTAGTTTTACGATCTCTTTATGAACTTTTTGAAAAGACAAAGTGTCAGTTTTGTAGCTGTCTATCTCAGATTTCATTTAAAATATCTTCATTTGTGTTTTGAAGATGAATGAAAGTCTTACGGGTTTGAAAGGACATGATGGCAAATTTGTTCATTTTTGGGTGAGCTAGCCCTTTAAACTAAAACATTATTTTCTAAATCTCTTAAATATGGCTCAAACATGACCACAGTTCAATTTGTTATTTTCATCTTTCAAGAAAGAAAAAAATATACTTTATAAATAATCTTTTCTCATGCTCTACTCCAAAAAAATATTTCTTAATGACTCTCCGTTACATTTTCCAGTTATTCATGACTACGAGATAATAATTAAAAATTGTTAAAGAATTATTTTAAAAGAATTAACTGTATACAGACTTATACTGTACTATACAATTCTATACAATTTCTAGTTAATTTTACAGCTGAGCATTTCTAGAAAGATCACTATAGAAATCTAAATGTAAAATCCAAATTTTAAAATTCCTTAAAGTTCCCAGGTTTGAAATCTTCCCATTAAAGTATGAACCCTGTAGGTCCCGATACATTTCGTCCTCCGATCTTTACCACAGCCTGCTCTGCTGCAGTCTCTTCTGCTGCGACCCCTCACCTTTGACCCCCTGAACCTGGCTATTCATCCAGGGGCTTGGAAAAGCGATGAGGATTTTGGAGGGGTTGATGGAGGTGGAGGGGGGAGGAAGGAGAGGTTTGAAGAAGATGCAACACTGACCCAGAAAAATCATGACAACCACCTCCATTAAAAAGACAAGCAGTTACAGCTCACAACCACACCAACATCAGGCTTAAACATTTCACTGGGAAAACACACATATGCTTTCAAAAGAGAAGGAGAACACAGACAGAGGCTGTGGTGAGCAAAGTCAGTTTTATTTGAAGTTATGAAAGACACAAGATGCAGCAACACACCAGAGAACGTGTTAGTAGAAGAAAGAAAACAAGAGCATCAGATTCTACAGACATGCTTCTATTTGTCCCATCTCATCCCTCTCTTCTCATCTACCCATCTCCCTTCTCTAGTGTTCTACTATGTACAATGTCACACAATAATGAACAATATGAAATGGTTTGAAAAAGTGTGTGGAAAGCAAGTTTTAGTGGACTATACAGATGCTGAAGAACACAACCATGCCACATTAATCCACTGTACAGGAAGTGTGAGAGAGAGAGATAGCATTACAGGGCTCACTTTCAGACACAGCAGATCAAAGTTCAAATGGCTCTCAGCACTACAAAACATTGAGGGGAACCAATGAGAAATGAGAGAATTAAGTGTAACAGGACCTGCAGCTTAAATCAATGTTAGCGTCGATACAAGAGAAGCTGCATTTGCAGCATTTCTGGCATAATGGTGATTAGCACAATGTATAATTCTGACTCATACCTCAGGTTATTTGTTTTGTTTTAATACAATCAAACCAAAAATTATTCAGACATTTTTGATATTTCTGATATATTTTTACTAGTGGGTGCAGGACACTATAGTTCATTTATGTAAGTGGATAGCTAAATAAACTGTGACATATTATACCCAAAAATTATTCATACAGTGGACTACCAGTAAAATTGCTAAAAATTTGGAACCAAAAATTATTCAGACACTTTGACCTGACCCTGTTTTGCTTAAGTGTTATCTGACATAATTAAGATTAAGTTTTTCTGACACAGTTTAACTCTGAGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU802626 lncRNA upstream 9008 6645442 ~ 6646838 (+) True G681652
TU802648 lncRNA upstream 10523 6645108 ~ 6645323 (+) True G681674
TU802662 lncRNA upstream 23917 6631653 ~ 6631929 (+) True G681685
TU802660 lncRNA upstream 25300 6630330 ~ 6630546 (+) True G681683
TU802659 lncRNA upstream 25783 6629825 ~ 6630063 (+) True G681682
TU802686 lncRNA downstream 76307 6735853 ~ 6736093 (+) True G681706
TU802688 lncRNA downstream 78053 6737599 ~ 6737901 (+) True G681708
TU802719 lncRNA downstream 177773 6837319 ~ 6837698 (+) True G681739
TU802730 lncRNA downstream 219015 6878561 ~ 6878839 (+) True G681749
TU802736 lncRNA downstream 231338 6890884 ~ 6891084 (+) True G681755
CI01180000_06638215_06643427.mRNA mRNA upstream 12026 6637809 ~ 6643820 (+) True CI01180000_06638215_06643427
CI01180000_06608734_06626459.mRNA mRNA upstream 29034 6608734 ~ 6626812 (+) True CI01180000_06608734_06626459
CI01180000_06581704_06589445.mRNA mRNA upstream 66365 6580990 ~ 6589481 (+) True CI01180000_06581704_06589445
CI01180000_06532667_06556697.mRNA mRNA upstream 98342 6532276 ~ 6557504 (+) True CI01180000_06532667_06556697
CI01180000_06503211_06517041.mRNA mRNA upstream 138744 6503211 ~ 6517102 (+) True CI01180000_06503211_06517041
CI01180000_06704767_06711402.mRNA mRNA downstream 45221 6704767 ~ 6712156 (+) True CI01180000_06704767_06711402
CI01180000_06714748_06715005.mRNA mRNA downstream 55059 6714605 ~ 6715107 (+) True CI01180000_06714748_06715005
CI01180000_06755090_06760583.mRNA mRNA downstream 95544 6755090 ~ 6760583 (+) True CI01180000_06755090_06760583
CI01180000_06762114_06762590.mRNA mRNA downstream 102568 6762114 ~ 6762772 (+) True CI01180000_06762114_06762590
CI01180000_06813558_06824034.mRNA mRNA downstream 153116 6812662 ~ 6824522 (+) True CI01180000_06813558_06824034
TU802663 other upstream 20857 6632908 ~ 6634989 (+) True G681686
TU802553 other upstream 176847 6473035 ~ 6478999 (+) True G681592
TU802202 other upstream 1282084 5370410 ~ 5373762 (+) True G681268
TU802064 other upstream 1870215 4783305 ~ 4785631 (+) True G681137
TU801653 other upstream 2871405 3765691 ~ 3784441 (+) True G680736
TU802812 other downstream 743601 7403147 ~ 7469605 (+) True G681817
TU802830 other downstream 1003877 7663423 ~ 7694381 (+) True G681822
TU802826 other downstream 1034777 7694323 ~ 7694381 (+) True G681822
TU803281 other downstream 1708639 8368185 ~ 8368935 (+) True G682232
TU803553 other downstream 2376871 9036417 ~ 9038892 (+) True CI01180000_09036547_09038313

Expression Profile