RNA id: TU802826


Basic Information

Item Value
RNA id TU802826
length 59
RNA type TUCP
GC content 0.49
exon number 1
gene id G681822
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 7663423 ~ 7694381 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCTTTCCGATGACGCAAAGCCGATGAGCGTGTGACATTGGTGTGAATGATCTGAGCTGGTTAGGATGGCCCTGTCGTTGTCCGGGGTGATTTTGCCCAAACTGATGCAGCAGAGGGCTTTCAGTGTCTCGGCAACTGTGGCTGCTATTCAGAAGTTAACACGCGTGAGGGTGGTCGACAACAGCGCTCTTGGAAATGCCCATCACCACCGTCCACCAAAAGTCATTCACGTGTACACCAAGAATGGAGTCGGTAAAGTGGGAGACAGAGTCTTACTGGCCATTAAAGGACAGAAGAAAAAAGCTCTCATAGTGGGTCATAAGATGCCTGGAGCGCGAATGACCCCACGCTTCGATTCAAATAATGTTGTTCTGATTGAAGAGAATGGAAACCCCACAGGAACAAGAATAAAAACTCCTATACCAACTCACCTGCGCAAAATGGAAGGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU803019 lncRNA upstream 46383 7647690 ~ 7647940 (+) True G681993
TU803018 lncRNA upstream 46949 7647157 ~ 7647374 (+) True G681992
TU803017 lncRNA upstream 47287 7646815 ~ 7647036 (+) True G681991
TU803016 lncRNA upstream 48171 7645821 ~ 7646152 (+) True G681990
TU802877 lncRNA upstream 63169 7629096 ~ 7629573 (+) True G681852
TU802816 lncRNA downstream 31072 7726460 ~ 7728061 (+) True G681819
TU803079 lncRNA downstream 177568 7872956 ~ 7873231 (+) True G682050
TU803080 lncRNA downstream 186453 7881841 ~ 7882139 (+) True G682051
TU803082 lncRNA downstream 189501 7884889 ~ 7885102 (+) True G682053
TU803085 lncRNA downstream 194681 7890069 ~ 7890372 (+) True G682056
CI01180000_07655737_07662839.mRNA mRNA upstream 31391 7654823 ~ 7662932 (+) True CI01180000_07655737_07662839
CI01180000_07630010_07630436.mRNA mRNA upstream 63407 7629585 ~ 7630916 (+) False CI01180000_07630010_07630436
CI01180000_07558791_07591349.mRNA mRNA upstream 102431 7558791 ~ 7591892 (+) True CI01180000_07558791_07591349
CI01180000_07508387_07529689.mRNA mRNA upstream 164026 7508069 ~ 7530297 (+) True CI01180000_07508387_07529689
CI01180000_07472651_07489000.mRNA mRNA upstream 204974 7470005 ~ 7489349 (+) True CI01180000_07472651_07489000
CI01180000_07802968_07887251.mRNA mRNA downstream 107580 7802968 ~ 7887251 (+) True CI01180000_07802968_07887251
CI01180000_07939719_07956224.mRNA mRNA downstream 243804 7939192 ~ 7957335 (+) True CI01180000_07939719_07956224
CI01180000_08012978_08021101.mRNA mRNA downstream 317590 8012978 ~ 8021401 (+) True CI01180000_08012978_08021101
CI01180000_08028837_08040090.mRNA mRNA downstream 333449 8028837 ~ 8040604 (+) True CI01180000_08028837_08040090
CI01180000_08082738_08089656.mRNA mRNA downstream 387350 8082738 ~ 8090111 (+) True CI01180000_08082738_08089656
TU802812 other upstream 224718 7403147 ~ 7469605 (+) True G681817
TU802641 other upstream 1034777 6655846 ~ 6659546 (+) True G681667
TU802663 other upstream 1059334 6632908 ~ 6634989 (+) True G681686
TU802553 other upstream 1215324 6473035 ~ 6478999 (+) True G681592
TU802202 other upstream 2320561 5370410 ~ 5373762 (+) True G681268
TU803281 other downstream 672797 8368185 ~ 8368935 (+) True G682232
TU803553 other downstream 1341029 9036417 ~ 9038892 (+) True CI01180000_09036547_09038313
TU806595 other downstream 3124598 10819986 ~ 10866176 (+) True G685188
TU806866 other downstream 3438344 11133732 ~ 11141722 (+) True G685443
TU806892 other downstream 3457901 11153289 ~ 11156485 (+) False CI01180000_11153499_11155781

Expression Profile