RNA id: TU803085


Basic Information

Item Value
RNA id TU803085
length 304
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G682056
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 7890069 ~ 7890372 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTGTCTGTGCAAGCAGATGATGGTGCTATTGGGGCATTTGTGGCTTAATGGTTAGAGAGTCAGACTGGTAACCCGAAGGTTGTGGGTTCAAGTCTCAATACCGGCAGGAAATTGCTCCCAGGGTGCCACTGCTCTGGTTGTGTGTGTCCACAGTTTGCAGTGTGTGTTCACTACTCACTACTCCTAAAGTGTGTGTGCTAATTGGATGAGTTAAATGCAGAGGACAAATTCTGAGTATATGTTACCACACTTGGCCTTCACATGCCACTTTCACTTTTTCACTTTCACTATTTGTGAAAAGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU803082 lncRNA upstream 4967 7884889 ~ 7885102 (+) True G682053
TU803080 lncRNA upstream 7930 7881841 ~ 7882139 (+) True G682051
TU803079 lncRNA upstream 16838 7872956 ~ 7873231 (+) True G682050
TU802816 lncRNA upstream 162008 7726460 ~ 7728061 (+) True G681819
TU802835 lncRNA upstream 176677 7687327 ~ 7713392 (+) True G681823
TU803088 lncRNA downstream 2396 7892768 ~ 7892975 (+) True G682059
TU803090 lncRNA downstream 4113 7894485 ~ 7894745 (+) True G682061
TU803100 lncRNA downstream 20389 7910761 ~ 7911129 (+) False G682068
TU803099 lncRNA downstream 20447 7910819 ~ 7911129 (+) True G682068
TU802822 lncRNA downstream 32621 7922993 ~ 7995483 (+) True G681820
CI01180000_07802968_07887251.mRNA mRNA upstream 2818 7802968 ~ 7887251 (+) True CI01180000_07802968_07887251
CI01180000_07694615_07695428.mRNA mRNA upstream 194523 7694529 ~ 7695546 (+) False CI01180000_07694615_07695428
CI01180000_07655737_07662839.mRNA mRNA upstream 227137 7654823 ~ 7662932 (+) True CI01180000_07655737_07662839
CI01180000_07630010_07630436.mRNA mRNA upstream 259153 7629585 ~ 7630916 (+) False CI01180000_07630010_07630436
CI01180000_07558791_07591349.mRNA mRNA upstream 298177 7558791 ~ 7591892 (+) True CI01180000_07558791_07591349
CI01180000_07939719_07956224.mRNA mRNA downstream 48820 7939192 ~ 7957335 (+) True CI01180000_07939719_07956224
CI01180000_08012978_08021101.mRNA mRNA downstream 122606 8012978 ~ 8021401 (+) True CI01180000_08012978_08021101
CI01180000_08028837_08040090.mRNA mRNA downstream 138465 8028837 ~ 8040604 (+) True CI01180000_08028837_08040090
CI01180000_08082738_08089656.mRNA mRNA downstream 192366 8082738 ~ 8090111 (+) True CI01180000_08082738_08089656
CI01180000_08188493_08197943.mRNA mRNA downstream 298121 8188493 ~ 8198044 (+) True CI01180000_08188493_08197943
TU802830 other upstream 194402 7663423 ~ 7694381 (+) True G681822
TU802826 other upstream 194681 7694323 ~ 7694381 (+) True G681822
TU802812 other upstream 420464 7403147 ~ 7469605 (+) True G681817
TU802641 other upstream 1230523 6655846 ~ 6659546 (+) True G681667
TU802663 other upstream 1255080 6632908 ~ 6634989 (+) True G681686
TU803281 other downstream 477813 8368185 ~ 8368935 (+) True G682232
TU803553 other downstream 1146045 9036417 ~ 9038892 (+) True CI01180000_09036547_09038313
TU806595 other downstream 2929614 10819986 ~ 10866176 (+) True G685188
TU806866 other downstream 3243360 11133732 ~ 11141722 (+) True G685443
TU806892 other downstream 3262917 11153289 ~ 11156485 (+) False CI01180000_11153499_11155781

Expression Profile