RNA id: CI01180000_07694615_07695428.mRNA


Basic Information

Item Value
RNA id CI01180000_07694615_07695428.mRNA
length 630
RNA type mRNA
GC content 0.40
exon number 2
gene id CI01180000_07694615_07695428
representative False

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 7694529 ~ 7695667 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTATATAAATACTCGTTTCTAATAGAGAACAAGTTATATTATTGTTATTATTATACATTTTTGATTGTTTTTATTGTCAGGTTAGGATGGCCCTGTCGTTGTCCGGGGTGATTTTGCCCAAACTGATGCAGCAGAGGGCTTTCAGTGTCTCGGCAACTGTGGCTGCTATTCAGAAGTTAACACGCGTGAGGGTGGTCGACAACAGCGCTCTTGGAAATGCCCATCACCACCGTCCACCAAAAGTCATTCACGTGTACACCAAGAATGGAGTCGGTAAAGTGGGAGACAGAGTCTTACTGGCCATTAAAGGACAGAAGAAAAAAGCTCTCATAGTGGGTCATAAGATGCCTGGAGCGCGAATGACCCCACGCTTCGATTCAAATAATGTTGTTCTGATTGAAGAGAATGGAAACCCCACAGGAACAAGAATAAAAACTCCTATACCAACTCACCTGCGCAAAATGGAAGGGGAATATTCTAAACTGTTAGCCATTGCTCAGCGATTTGTTTAGATCAGCATTTTTGTATTCTAGGACAAATCCTAAAATATGTAACTTTGTAAATATAAAAAAAATGTGTTCTTTCCATTCAGGAAATGTGCTTTCATGGTTACTTGTGGAAAAATTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU803019 lncRNA upstream 46589 7647690 ~ 7647940 (+) True G681993
TU803018 lncRNA upstream 47155 7647157 ~ 7647374 (+) True G681992
TU803017 lncRNA upstream 47493 7646815 ~ 7647036 (+) True G681991
TU803016 lncRNA upstream 48377 7645821 ~ 7646152 (+) True G681990
TU802877 lncRNA upstream 63375 7629096 ~ 7629573 (+) True G681852
TU802816 lncRNA downstream 30914 7726460 ~ 7728061 (+) True G681819
TU803079 lncRNA downstream 177410 7872956 ~ 7873231 (+) True G682050
TU803080 lncRNA downstream 186295 7881841 ~ 7882139 (+) True G682051
TU803082 lncRNA downstream 189343 7884889 ~ 7885102 (+) True G682053
TU803085 lncRNA downstream 194523 7890069 ~ 7890372 (+) True G682056
CI01180000_07655737_07662839.mRNA mRNA upstream 31597 7654823 ~ 7662932 (+) True CI01180000_07655737_07662839
CI01180000_07630010_07630436.mRNA mRNA upstream 63613 7629585 ~ 7630916 (+) False CI01180000_07630010_07630436
CI01180000_07558791_07591349.mRNA mRNA upstream 102637 7558791 ~ 7591892 (+) True CI01180000_07558791_07591349
CI01180000_07508387_07529689.mRNA mRNA upstream 164232 7508069 ~ 7530297 (+) True CI01180000_07508387_07529689
CI01180000_07472651_07489000.mRNA mRNA upstream 205180 7470005 ~ 7489349 (+) True CI01180000_07472651_07489000
CI01180000_07802968_07887251.mRNA mRNA downstream 107422 7802968 ~ 7887251 (+) True CI01180000_07802968_07887251
CI01180000_07939719_07956224.mRNA mRNA downstream 243646 7939192 ~ 7957335 (+) True CI01180000_07939719_07956224
CI01180000_08012978_08021101.mRNA mRNA downstream 317432 8012978 ~ 8021401 (+) True CI01180000_08012978_08021101
CI01180000_08028837_08040090.mRNA mRNA downstream 333291 8028837 ~ 8040604 (+) True CI01180000_08028837_08040090
CI01180000_08082738_08089656.mRNA mRNA downstream 387192 8082738 ~ 8090111 (+) True CI01180000_08082738_08089656
TU802812 other upstream 224924 7403147 ~ 7469605 (+) True G681817
TU802641 other upstream 1034983 6655846 ~ 6659546 (+) True G681667
TU802663 other upstream 1059540 6632908 ~ 6634989 (+) True G681686
TU802553 other upstream 1215530 6473035 ~ 6478999 (+) True G681592
TU802202 other upstream 2320767 5370410 ~ 5373762 (+) True G681268
TU803281 other downstream 672639 8368185 ~ 8368935 (+) True G682232
TU803553 other downstream 1340871 9036417 ~ 9038892 (+) True CI01180000_09036547_09038313
TU806595 other downstream 3124440 10819986 ~ 10866176 (+) True G685188
TU806866 other downstream 3438186 11133732 ~ 11141722 (+) True G685443
TU806892 other downstream 3457743 11153289 ~ 11156485 (+) False CI01180000_11153499_11155781

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU139762 True 869 lncRNA 0.41 2 NC_056711.1 16593425 ~ 16594731 (-)
mexican tetra (Astyanax mexicanus) TU139762 False 335 lncRNA 0.43 2 NC_035908.1 14024292 ~ 14079252 (+)