CI01180000_07655737_07662839 (MLH1)


Basic Information

Item Value
gene id CI01180000_07655737_07662839
gene name MLH1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 7654823 ~ 7662932 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_07655737_07662839.mRNA
GTCATATAAACAAGAGCCTGTCCAATTTAACAGATTACTGAATACATTTTTTTGTTGTTAGTACAGTTCTTTGACAGTGACATTAACTATTCTAGACCTTTAAATCTGCTCCAGCACACACACACACACACACACACACACACACACACAGGTTTGTTTTGCTATCTTAGTGAGGACATTGCATAGACTTCCATTGATTTTATATCAGGTCAATAATATTTTTTATCACCTAACCCAACCCCTACTCCTAAACCTACTAATCACATAGACATGTGCAAAACAATAGATTTAAATAAAAACTTCTTTTGGTTGATTTATAAGCCTTTTTAACTAGTGAGGACCAGTCAAATGTCCTAACTAGTGGGTTGTGAAAGTATTTGGTCCTCACAAGTATATTTTTTTCAATAAATTATATGTCATCTTCCACTACTCATTCATTGTTTCAAAAATATATGACCCTGTCGTTTGGTCTTTCAATTGTTTTCAATTCCTTTCATTTGATTTTTCAATGTCATGTCCATTCTGATTGGTCGGTTAACTATTGAGACCACAAATGAAAGGAAAATTAAAAAGACATCTTTATACCTTATATTCACCTTATTATGCACAGTAGTAGGTGACGGTTAAAACAACTGTTTAATATTATCATTTGAATTGTCTGGTTAATCTTGACGTACCGCTTCGGTCTACTTCACTTCAGGCATGACATCAGCGGATATAGTTCTTCCACCAGCCAATCACAGCACTCGGGAGGCGGGCGCTTGTCATTCGCGCCAGAAGTTCTGCGAGTCTCGTGTTTGAGACGTAAACAAACATTCACGTGCTTTTGAATGAGCTTATATTTTATGTATTGAATGAGTGACAGTTCATGTAAATGTGTTTGTTTATCATTTAGTGAATGAGTGAGAGTTCATCATGGCGGGAGTCATCCGCAGACTCGATGAGACTGTAGTGAACCGCATCGCAGCAGGAGAGATTATCCAGCGGCCTGCCAATGCTATCAAAGAGATGATGGAGAACTGTTTGGATGCAAAGGCCACAAATATCCAGATAACAGTGAAAGAAGGCGGACTGAAGCTCATCCTCATTCAGGACAATGGCACTGGCATCAGGAAAGATGATATGGAAATAGTTTGTGAACGTTTTACGACCAGCAAGCTTCAGTCTTTTGAGGACTTGGCATCAATCGCAACATATGGATTCAGAGGCGAGGCTCTCGCCAGTATAAGTCATGTAGCCCATGTCACAATCACCACAAAAGCAGCTGATGCAAAATGTGCCTACAGGGCAAGTTACAGTGATGGGAAGCTAAAATCTCCACCCAAACCTTGTGCTGGAAACCAGGGGACATTGATTTCGGTAGAGGATCTGTTCTATAATGTGTCCACCCGACGGAAAGCCCTGAAGAGCCCCAGTGAGGAATATTCTAGAATCATTGAGGTTGTGAGCAGATATGCCATTCACAACTCTGGGAAAAGTTTTGCTGTAAAGAAGCAAGGCGAGATGGTTGCAGATGTCAAGACCCTTATAAACGCCTCTGTGCTGGACAACATTCGTGTGGTGTTTGGTGTAGCTGTTAGCAGGGAGCTGATTGAAGTTGAGTGCGAGGATCAGAAACTCGCTTTTAAAATGAAGGGTTACATCTCCAATGCCAACTACTCTGTCAAGAAATGTGTCCTTATCCTTTTTATCAACGATCGCTTGGTGGAGTCTGCTGCCTTGAAGAAAGCTATTGAGACTGTCTACACTGCTTACCTTCCCAAAAACACTCATCCTTTTCTTTATCTTAGTTTAGAGATTGCTCCTCAAAACATTGACGTGAATGTTCACCCCACCAAGCACGAGGTGCACTTCCTGCATGAGGACAGCATCATCGAGAGCATTCAGAAACACATTGAGAGTAAACTGCTTGGCTCTAACTCCTCACGCACGTACTTCACACAGACTCTGCTTCCAGGACTTTCAGCATCTGCCAGTGTGGTGAAAGCCTCCAGTTCCTCAGCGGATTCCCAGGAGCGCATATACGCCCATCAGATGGTCCGCACTGACAGCAAAGCCCAGAAGCTGGATGCATTTCTCCAGCCATCAACCTCTTCGTCTACCGCGCAGTGCAAGTCAGATAAAACCTCCAGCCCCCCCACTGCCGAGCCAGACGACACAGAGCTGCTGAATGCTGTTGACGATCTGGAGCCATGTGGCTCAGAGGATCCACCAACAGACATTCAACCTTCCACTGATGAAGCACCACCAAGGAAAAGGCCTCATGTTGAGGAGGTGAAGGAGGATTTGACAGCCGCCTGTCTTCCCAGGAGACGCGTCATTAAACTCACCAGCATAAAGGAGCTTCGGGAGGAAATTGAGCAGCAAACTCACAAAGGTTTACAGGAGCTGCTCCAGAATCACTCATTTGTGGGTTCAGTCAGTCCTCAATGGACTCTAGTGCAGCACCAGACGAAACTCTATCTGCTCAATACAACCAAATTCAGTCAGGAGCTGTTTTATCAAATTTTGATCTACGATTTTGGTAACTTTGGAGTCCTTCGATTGTCGAATCCAGCTCCGCTCTATGATTTGGCCATGTTGGCTCTAGATTCAGAGGAGAGCGGATGGACGGATGAGGACGGACCAAAAGAAGGACTGGCCCAGTATATTGTGGATTTCCTTAAGCAGAAATCAGAAATGCTGGAAGAGTACTTTTCCCTGGAAATAGATGGGGAAGGGAACCTGACTGGTCTGCCAATGCTGCTCGATAATTACACTCCTGCCATGGAGGGTCTTCCGATGTTCATTCTGCGTTTAGCCACTGAGGTGAACTGGGATCGAGAAAAGGACTGTTTCCATGACTTCAGCATAGAATGCAGTCACTTCTATTCCATAAGGAAACGCTACACACTGGAGCCGGATGCAGAAGAGCCGCAGTTTCAGCTATCAGAAATGGCTGCTTCTGCTGCGCTTTATATTGGTCAGCTGACAAACCCAAAATGACAGAGACCAAGATACACATTCTGTCTGTCACATTATTTCAGATGACCAGCAAACATTAAACTGAGGATTTATAGACATTTGTACTGCAGATG

Function

symbol description
mlh1 Predicted to enable ATP hydrolysis activity. Acts upstream of or within meiosis I and spermatogenesis. Predicted to be located in nucleus. Predicted to be part of MutLalpha complex. Is expressed in testis. Human ortholog(s) of this gene implicated in Lynch syndrome (multiple); gastrointestinal system cancer (multiple); lung cancer; mismatch repair cancer syndrome; and sporadic breast cancer. Orthologous to human MLH1 (mutL homolog 1).

GO:

id name namespace
GO:0032389 MutLalpha complex cellular_component

KEGG:

id description
K08734 MLH1; DNA mismatch repair protein MLH1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_07655737_07662839.mRNA True 3077 mRNA 0.44 19 7654823 7662932

Neighbor

gene id symbol gene type direction distance location
CI01180000_07630010_07630436 NA coding upstream 23907 7629585 ~ 7631154 (+)
CI01180000_07558791_07591349 CPEB3 coding upstream 62931 7558791 ~ 7591892 (+)
CI01180000_07508387_07529689 IDE coding upstream 124526 7508069 ~ 7530297 (+)
CI01180000_07472651_07489000 OPN3 coding upstream 165474 7470005 ~ 7489349 (+)
CI01180000_07431871_07436446 NA coding upstream 218198 7430824 ~ 7436625 (+)
CI01180000_07694615_07695428 MRPL14 coding downstream 31597 7694529 ~ 7695667 (+)
CI01180000_07802968_07887251 CDH23 coding downstream 140036 7802968 ~ 7887251 (+)
CI01180000_07939719_07956224 CDH23 coding downstream 276260 7939192 ~ 7957335 (+)
CI01180000_08012978_08021101 SMOC2 coding downstream 350046 8012978 ~ 8021401 (+)
CI01180000_08028837_08040090 SMOC2 coding downstream 365905 8028837 ~ 8040604 (+)
G681993 NA non-coding upstream 6883 7647690 ~ 7647940 (+)
G681992 NA non-coding upstream 7449 7647157 ~ 7647374 (+)
G681991 NA non-coding upstream 7787 7646815 ~ 7647036 (+)
G681990 NA non-coding upstream 8671 7645821 ~ 7646152 (+)
G681823 NA non-coding downstream 24395 7687327 ~ 7713392 (+)
G681819 NA non-coding downstream 63528 7726460 ~ 7728061 (+)
G682050 NA non-coding downstream 210024 7872956 ~ 7873231 (+)
G682051 NA non-coding downstream 218909 7881841 ~ 7882139 (+)
G682053 NA non-coding downstream 221957 7884889 ~ 7885102 (+)
CI01180000_07403482_07412752 HELLS other upstream 185218 7403482 ~ 7413190 (+)
G681667 NA other upstream 995277 6655846 ~ 6659546 (+)
G681686 NA other upstream 1019834 6632908 ~ 6634989 (+)
G681592 NA other upstream 1175824 6471995 ~ 6478999 (+)
G681268 NA other upstream 2281061 5370410 ~ 5373762 (+)
G682232 NA other downstream 705253 8368185 ~ 8368935 (+)
CI01180000_09036547_09038313 MGST3B other downstream 1373485 9035736 ~ 9038892 (+)
G685188 NA other downstream 3157054 10819986 ~ 10866176 (+)
G685443 NA other downstream 3470800 11133732 ~ 11141722 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location