CI01180000_07939719_07956224 (CDH23)


Basic Information

Item Value
gene id CI01180000_07939719_07956224
gene name CDH23
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 7939192 ~ 7957335 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_07939719_07956224.mRNA
AAATTAAAAAGCCCGGTAGGGAAACCAGCATTCAAAACATGACATATCCTGGTGTTTTCAACAGGGGTCCAATTAAAAACATTTAGTTTTCAGTTTATTCTTTGTGGCTCAACTTTACCTTTAGCGTTGAATGCGTTTGGTGACTCCTCCAAAGTTCCGCAAGAGTTTCAAATCACGTTGTCACCAAGAGTATTGAGATGAGACAGCTGGAAGATCAGAAAAAGTGGAGCTAATATCCGTTCAGAGAGACTCAAAATCAACCTCTCCTTCTTTTTGACCATAGCAGTGTGTTTCATGAGCTAAAAACCCATTCTGAGCCAAACTTTCAGCCTCAAGTTTTAACCCCCCGTGTGATGGAATGGTCCGGTCTGCCTGTTCTATTCATCTCTCTCCAAGAGACCCCCCCCCCCAGACCCCTTCTTTCTTTCTTTCCCCCTCCTCCTCCTCATCCCCTGCTCCTTTCTTCCCCCCTCCTCCTCCTCATCCCCTGCTCCTTTCTTCTCCTCTCCACATCTCTTTATAAAGCTAATGAGTCTGAAGGAGGGGCCGTCCTCCTCACTGTCGGTTCAGGCCACAGATGCAGATCAGGGGGAGAATGGAAGAGTTCTGTACAGGATTCTCTCTGGAAACAATGGTCAGTTTAATGTGGATAGTCTGTCTGGACTCATCAGCAGAGGAACTGTGGCTCTGGACAGAGAGACGCGCAGCTCTCATGTGCTGGAGGTGGAGGCCTACAACAGTGACCAGGGCAGCATGCGCAGCTCTGTCAGGGTGATTGTGTACGTAGAGGATGTGAATGACGAGTCTCCAGTCTTCACCCAGTCGCAGTACAATCGTCTGGGGCTCAGAGAGACCGCTGGGATTGGCACATCTGTGGTAGTGGTCCGAGCTACAGACCCTGACACAGGGGATGGGGGTGCTGTGGCATACTCTCTGGTCTCTGGCTCTGACCGTAAATTTGAAGTGGATATGAGTACGGGTCTAGTAACCACAGTGGATTACTTGGACTATGAGACCAAAACCAGCTATTTAATGAACGTCTCAGCCACAGATCAGTCACCGCCTTTCCACCGCGGCTACTGCACCGTTTATGTCACTTTACTCAACGAACTGGATGAAGCCGTGGCCTTTCTTTCAGCCGGTTACGAGGCATCACTGAGAGAGAACATCGCCACAGGAACAGAGGTGGTCCAGGTGAAGGCACAGTCGGCCGATAACCTGAACCAGCTGACGTACCGCTTTGACCCTGACACCTCGCCTGCTGCCCTGGCACTCTTTAAGATTGACAGTGTCACGGGCCGTATATCTGTGACGGGACTGTTGGACAGAGAGCAGGGGGATTCATACACTCTCACTGTTGTGGCCGATGACGGAGGACCCAAGAGAGACTCCACTGTGGTGTCAATCACCATTCTCGACGAGAATGACAACAGCCCAGAGTTTGACATCACTTCAGATTTGTCGGTGTCTATTCCAGAGGACACAACCATTGGCCGGAGAGTTGCAGTCGTGTTGGCGCGGGACAAAGACGCTGGAAGAAATGGACTGGTAAATTTCACCTTGATCGCGGGGAACATGCAGGACGTGTTTAAGATCAACACAGCCAATAACACGTATGGAGAGGTTTACTTGAATGCCCCTCTGGACCGTGAAGCCGTGGACCGTTACCTGCTAAAGGTGCGGGCGACAGATAATGGTTCCCCTCCGAGGTTCACAGATGTGTCGCTCACGGTGAATATTATGGATGTAAATGATAACCCTCCCGTTCTGCAGAGCCCTCGTGGATACAACGTCAGCGTCAGTGAGAATGTGGGGGGTGGTACATCAGTCCTACGTGTCATAGCAACGGATCGTGACATCGGACCCAATGCCATGCTGTCGTACTACATCACCGGTGGGAATCAGGACCTGACCTTCAGAATGGACCGTATGACGGGAGAGATAGTGACCCGACCGTCACCTCCTGACAGAGAAAAACAGCAGCGGTACACGCTCACTGTGACTGTGGAAGATGACGGCACGCCACCTTTATCGACCCTTAAAGCCACAGGTGACGTAGATGTAAGAGAGTGGCATTGTGTTCAGTTGCCACGATGCAAAATTACCACAAAAAACTGCACTCATTCTGACAGAATGCATCATACACGCTACATATATCGTAAAAGCACCACACTCACCGCGAAAGGGTTTAAAATAGCCCATCGTTTCTCAGCAGGTCCAACGCTCTCCACTCAATGGAAAAGCAGGCCAGTTCTGAGATCTGCAGATTCCCTGGCCGAGCTCCAAATCTGGGACCAGCACAGGCGCCATTTCAGTGGTAAAGTGATAACTGAGTACTTTGGCAGTATTGGAGTATTGAGCAGAAGACAGGAAGAAAAGAGACATGATGATGTGGAGGAGAAAGAAGAAGCACTAGGTGTTCCTGGGGGGTGAACATGACATCTCTTATTCCAACAAGTTGGGAGACTCAGGAATGGGATCTGGAAAAGTAAAAGTAAAATGATTAGAGGGGGGCTATAAAGTCTGCTTAAAATGTTAGGCAAAGTTTCTTCAAAGGTTTCTACAGTTTATTTTTACATGACCATCCTCTCTCTGGCGTTTAGAATTAACAGGTCTATTTTTGCTGCTCTACCTTTTAAGACTTCTATATAAACGCCCTCTGTTATGATTAGGTAACGACTTTACATATGAAATGAGTGATGTCTCCAGGCTGTGTGGAAAGTCCATATGTAAATGTGCCATTTGTAATGTTTTTGCAGCTTAGTGTTAATGAATGGTCTAGGTGGGATGTGGTGGGAGATTCGAATTATGCATTATGTATTTTAACATTGTAGATTTATGTCGTTCCATATATATTTTACATTTATGCATTTGGCATAAATGTGCTCTGATTGGCCAGCATATTTTGCTTTCACATCCAAACTTTATCAAAATACAATAAGTTGCTCGGATAAAACTTTCCTTTCCGGCTGGCATATGTATCACTCACTTTTCCTGATCCAATCAATACGGTGGCCCAGTAGTGCACAACACAATGAAATTAAAAAAGCAAACATAAGTTCACAACACAACGAAATAAAGCCACAACATAAACAAGCCACAACACAATGAAATCAAGCCACAACACAACGGAAACGAGCCACAACACAAAGAAATAAAGCCACAACACAACGAAATCAAGCCACAATACAACAGAAATCCTCCCAACGACTAGGAGCTCTCAGAGCTTGGTAAAGTTAGATTTCCTCGATTAAACCACGATTATGTAAACATTGTATATTGACATGAAATATTAATTCAAAATCACCTATGTGCACAATAGCTTCATATTTATACCTGTGAATGATTTGATGCGCTACCACATGATGAAGGGAACGTCTGCCAATTCCACCATGTGGTTAAAACGAATAATTTGTATTCATTACAATGACTTTGTTTTAACATTTAAAAACAGCTATGTTCAAATTCCAAAGCTTGTTAGTTGTTAGTAAGACTGACTTACTACAGGTGACATTTTGTCAATACCTCCTTTCATGTACTTAC

Function

symbol description
cdh23 Enables transmembrane transporter activity. Acts upstream of or within several processes, including detection of mechanical stimulus involved in sensory perception of sound; equilibrioception; and mechanoreceptor differentiation. Located in cilium. Is expressed in nervous system and otic vesicle. Human ortholog(s) of this gene implicated in Usher syndrome type 1D; autosomal recessive nonsyndromic deafness; autosomal recessive nonsyndromic deafness 12; and pituitary adenoma 5. Orthologous to human CDH23 (cadherin related 23).

GO:

id name namespace
GO:0007626 locomotory behavior biological_process

KEGG:

id description
K06813 CDH23, USH1D; cadherin 23

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_07939719_07956224.mRNA True 3543 mRNA 0.46 13 7939192 7957335

Neighbor

gene id symbol gene type direction distance location
CI01180000_07802968_07887251 CDH23 coding upstream 51941 7802968 ~ 7887251 (+)
CI01180000_07694615_07695428 MRPL14 coding upstream 243646 7694529 ~ 7695667 (+)
CI01180000_07655737_07662839 MLH1 coding upstream 276260 7654823 ~ 7662932 (+)
CI01180000_07630010_07630436 NA coding upstream 308276 7629585 ~ 7631154 (+)
CI01180000_07558791_07591349 CPEB3 coding upstream 347300 7558791 ~ 7591892 (+)
CI01180000_08012978_08021101 SMOC2 coding downstream 55643 8012978 ~ 8021401 (+)
CI01180000_08028837_08040090 SMOC2 coding downstream 71502 8028837 ~ 8040604 (+)
CI01180000_08082738_08089656 DACT2 coding downstream 125403 8082738 ~ 8090111 (+)
CI01180000_08188493_08197943 ZFYVE21 coding downstream 231158 8188493 ~ 8198044 (+)
CI01180000_08764426_08774718 ZBTB8OS coding downstream 805948 8763283 ~ 8774792 (+)
G682068 NA non-coding upstream 28063 7910761 ~ 7911129 (+)
G682061 NA non-coding upstream 44447 7894485 ~ 7894745 (+)
G682059 NA non-coding upstream 46217 7892768 ~ 7892975 (+)
G682056 NA non-coding upstream 48820 7890069 ~ 7890372 (+)
G682053 NA non-coding upstream 54090 7884889 ~ 7885102 (+)
G682107 NA non-coding downstream 90233 8047568 ~ 8047837 (+)
G682108 NA non-coding downstream 92927 8050262 ~ 8050518 (+)
G682111 NA non-coding downstream 100110 8057445 ~ 8057678 (+)
G682113 NA non-coding downstream 101803 8059138 ~ 8059363 (+)
G682115 NA non-coding downstream 105755 8063090 ~ 8063446 (+)
CI01180000_07403482_07412752 HELLS other upstream 469587 7403482 ~ 7413190 (+)
G681667 NA other upstream 1279646 6655846 ~ 6659546 (+)
G681686 NA other upstream 1304203 6632908 ~ 6634989 (+)
G681592 NA other upstream 1460193 6471995 ~ 6478999 (+)
G682232 NA other downstream 410850 8368185 ~ 8368935 (+)
CI01180000_09036547_09038313 MGST3B other downstream 1079082 9035736 ~ 9038892 (+)
G685188 NA other downstream 2862651 10819986 ~ 10866176 (+)
G685443 NA other downstream 3176397 11133732 ~ 11141722 (+)
CI01180000_11153499_11155781 NA other downstream 3195954 11153183 ~ 11157626 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006207 cdh23 coding NC_007124.7 CM002897.2 43050562 ~ 43213012 (+)