CI01180000_07802968_07887251 (CDH23)


Basic Information

Item Value
gene id CI01180000_07802968_07887251
gene name CDH23
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 7802968 ~ 7887251 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_07802968_07887251.mRNA
TACATCCATTACCCAGCTGCAGGCGGTCGATCCAGACGGCGAGCCGTTGATTTTCGGTGTGGTCGGGGAAGAGGCCATGCGGTATTTCGCTGTGCAGGAGACGACTGGGGTGGTGTGGCTAAGACAGCCGCTTGACAGGGAGACTAAGTCAGAGATGCAGGTGGAGTTCTCAGTCAGTGACAGTCAAGGGGTTGTCAAGGATACAGTGAACATTCAGATCGGAGATGTAAATGACAATTCTCCAACATTTCACAACCAGCCGTATGCCATTCAAATACCAGAGAACACTCCAGTCGGAACATCGGTGTTCATGGTGAACGCGACAGACCCGGATCAAGGCGTAGGCGGCAGTGTGCTCTTCTCCTTCCAGCCTCCCTCTCCGTTCTTCTCCATTGACGGGGCCAGAGGAATCGTTACTGTGACGAGAGCGCTGGACTATGAGACGACAATCGCCTATCAGCTCACTGTTAACGCCACGGACCAGGATAAACGCCGTCCACTCTCTAGTCTGTCTAATTTGGCAATTACCATCACTGATGTTCAAGATATGGACCCCATCTTCACCAACCTCCCCTACAGCACTAACATAATGGAGGACGCACCACCGGGTTATGAAGTCCGTAAGATCAGGGCAATCGATCAGGACTTGGGTCGACCACGTGGAATCGGATATACGATCATATCAGGTAACACCAACAGCATGTTTTCTCTCGACTACATCAGCGGATCTCTGACAGTGAGCGGACAGCTGGACCGGGAAAACCCGCTGTACTCTTCTGGATTCACCATCACAGTGAGGGCAACAGAGCTGAATGATGACCGCACACCCACATCTGCCACCGTCATGACCACCTTCACCATCCTGCTGATCGATAAAAATGACAATCCGCCCAGATTTAACAGCTCTGAGTATCGGGTCCTTATCACTGAGCTGGCGCAGGTCGGCTTCGCTCTGCCTCTGTACATACAGGTCGAAGACAAAGATGAGGGGGTGAACAGCATGTTTCAGGTGGTCCTGACAGGAAACAACTCTGAGCACTTCAGCATCTCTCCCACATCAGTGCAGGGCAGAGCTGACCTCCGTGTGCGTGTGGCCATCCCGCTGGACTACGAAACCATCAGGAGCTACAGCTTTTCTGTGAG

Function

symbol description
cdh23 Enables transmembrane transporter activity. Acts upstream of or within several processes, including detection of mechanical stimulus involved in sensory perception of sound; equilibrioception; and mechanoreceptor differentiation. Located in cilium. Is expressed in nervous system and otic vesicle. Human ortholog(s) of this gene implicated in Usher syndrome type 1D; autosomal recessive nonsyndromic deafness; autosomal recessive nonsyndromic deafness 12; and pituitary adenoma 5. Orthologous to human CDH23 (cadherin related 23).

GO:

id name namespace
GO:0007626 locomotory behavior biological_process

KEGG:

id description
K06813 CDH23, USH1D; cadherin 23

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_07802968_07887251.mRNA True 1143 mRNA 0.53 9 7802968 7887251

Neighbor

gene id symbol gene type direction distance location
CI01180000_07694615_07695428 MRPL14 coding upstream 107422 7694529 ~ 7695667 (+)
CI01180000_07655737_07662839 MLH1 coding upstream 140036 7654823 ~ 7662932 (+)
CI01180000_07630010_07630436 NA coding upstream 172052 7629585 ~ 7631154 (+)
CI01180000_07558791_07591349 CPEB3 coding upstream 211076 7558791 ~ 7591892 (+)
CI01180000_07508387_07529689 IDE coding upstream 272671 7508069 ~ 7530297 (+)
CI01180000_07939719_07956224 CDH23 coding downstream 51941 7939192 ~ 7957335 (+)
CI01180000_08012978_08021101 SMOC2 coding downstream 125727 8012978 ~ 8021401 (+)
CI01180000_08028837_08040090 SMOC2 coding downstream 141586 8028837 ~ 8040604 (+)
CI01180000_08082738_08089656 DACT2 coding downstream 195487 8082738 ~ 8090111 (+)
CI01180000_08188493_08197943 ZFYVE21 coding downstream 301242 8188493 ~ 8198044 (+)
G681819 NA non-coding upstream 74907 7726460 ~ 7728061 (+)
G681823 NA non-coding upstream 89576 7687327 ~ 7713392 (+)
G681993 NA non-coding upstream 155028 7647690 ~ 7647940 (+)
G681992 NA non-coding upstream 155594 7647157 ~ 7647374 (+)
G681991 NA non-coding upstream 155932 7646815 ~ 7647036 (+)
G682056 NA non-coding downstream 2818 7890069 ~ 7890372 (+)
G682059 NA non-coding downstream 5517 7892768 ~ 7892975 (+)
G682061 NA non-coding downstream 7234 7894485 ~ 7894745 (+)
G682068 NA non-coding downstream 23510 7910761 ~ 7911129 (+)
G681820 NA non-coding downstream 35742 7922993 ~ 7995483 (+)
CI01180000_07403482_07412752 HELLS other upstream 333363 7403482 ~ 7413190 (+)
G681667 NA other upstream 1143422 6655846 ~ 6659546 (+)
G681686 NA other upstream 1167979 6632908 ~ 6634989 (+)
G681592 NA other upstream 1323969 6471995 ~ 6478999 (+)
G682232 NA other downstream 480934 8368185 ~ 8368935 (+)
CI01180000_09036547_09038313 MGST3B other downstream 1149166 9035736 ~ 9038892 (+)
G685188 NA other downstream 2932735 10819986 ~ 10866176 (+)
G685443 NA other downstream 3246481 11133732 ~ 11141722 (+)
CI01180000_11153499_11155781 NA other downstream 3266038 11153183 ~ 11157626 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location