XLOC_006207 (cdh23)


Basic Information

Item Value
gene id XLOC_006207
gene name cdh23
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 43050562 ~ 43213012 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012197
ttctctctgcaGGCCACGGATAATGACATTGGCACGTTTGGAGTGGTTCGGTATTACTTCAGCGATGAGCCAGACCAGTTCTCATTGGATGCTGAGACGGGTTGGGTGACTCTGAGAGGTCGGCTGGATTATGAGCTCATGCGGCGCTTCACTCTGACCATACTGGCCCGGGATGGAGGAGGAGAGGAGACCACAGGACGCCTCCGCATTAATGTGATGGATGTAAACGACAATGCTCCGGTCTTCCAGAAGGAGGCGTACACAGGCTCACTCATGGAGAACGAACAGGCTCCGCAGCAGGTCATCCGAGCCCGGGCGACAGATGAGGACTCTCCTCCTAATAACATCCTGACCTACTCCATCATCTACGCCTCTCAGTTCAGGTCATTCTTCAGCATCAGCATTGCGGAGGGCTACGCAGtcatCACCGTGACTCGTCCTCTGGATTATGAGCAGGTTCCTGGTGGATTGATCTTTCTGACTTTGATGGCTAAAGATGGAGGAAATCCATCTCTCAACAGCACCGTTCCAGTCATCATCGAGCTGATTGATCAGAACGACAACCCACCCGAGTTCAGCCTCCCGTCTTATATCGTCAACATACCAGAGAATATTGTTGCAGGTGCGACGGTGCTGTTTGTGAACGCCACAGATTTGGACGCCTCTCGAGAGTTCGGTCAGACCTCGCTCATCTACTCCCTGCAGGGCAGCTCACAGTTCAGACTCAACACACGCTCAGgagagaTTACCACCACAGCTCTTCTGGATCGAGAGATGAAGTCTGAGTATATTCTGATTGTAAGGGCTGTTGATGGAGGAGTGGGTCCACAGCAGAAGACTGGCATTGCTACGGTGAACATCACTGTCCTGGACATAAACGATAACGCCCCGGTGTGGCGGGATGAGCCGTATCAAGCAAACGTTGTGGAGATGAGTCCCATCGATACTGACGTCATCACTGTGTTTGCTGTGGACCCTGATTATGGTGATAATGGGACGGTGGTTTATTCTATAAATCCAGAAAACCCCTTTTACACCATCAACCGCAACACCGGAAAGATCCGCACCAGCGGGGCCGTGCTGGACAGAGAAAGCCAAGACGCTCGCTCCGCTCAGCTTATGAGGACCATCATTATCTCCGCCACTGACCGCGGGACTCCTCCACTGCGCTCTTCTGCCAGCGCTACAGTGTTTGTGAACCTCCTTGACCTGAATGATAACGACCCAGCCTTTCTCAACCTCCCGTTTGTCGCTGAGGTGCCTGAGGGACTTCCTATTGGATCGTCTGTGTTCAGGGTGCAAGTCCAGGACCCCGACGAAGCAGCCAATGGTGCTGTAACAATGGCCCTTCAGATGGGGATGCCGAGGCTGGACTTCAGGCTTAACATCACCACAGGAATTCTGGTGTCCACCGTAGTGCTGGACCGGGAGCAGATCGGCCAGTATTATCTGAGGATTATTGCATATGACGCAGGCCAGTTTCCCCGCACGTCCACAAGCACTCTCACTATCACAGttttggACGTGAATGATGAGACGCCCACTTTCTTCCCCAGTGTTTATAACGTGTCTCTGGAGGAGAGCGTACCCCGTGATTATCTGGTGGTCAGACTCAACTGCACGGATAATGACGCGGGTCTAAATGCAGAGCTCAGCTATTTTATCACAGCAGGGAACCAGGATGGAAAGTTCAGTGTTGGCTTCCGCACTGGTGTGGTGCGAACCGTGGTGGGCCTGGACCGCGAGACTCAGGCCTCGTACAGGCTAGTGATCGAAGCCATCGATAACGGTCCAGCGGGCGGCCGGAGGACAGGCACAGCTACAGTCTATGTGGAGGTGCTGGATGTCAATGATAACAGGCCTATATTTCTCCAGAACAGCTATGAGACCAGCGTCCTGGAGAACATTCCCAGAGGAACTAGTATATTACAGGTCCAGGCCACAGATGCAGATCAGGGCGAGAATGGAAAAGTTCTGTATCGAATTCTCTctgGCAACAATGGTCAGTTTAGCATGGACAGTCTGTCTGGACTCATCAGCAGAGGAAGCGTGGCTCTGGACAGAGAGACGCGCAGCTCTAATGTGCTGGAGGTGGAGGCATATAACAGTGACCTGGGCAGCATGCGCAGCACTGTCAGGGTGATTGTGTATGTGGAGGATGTGAATGACGAGTTTCCAGTCTTCACTCAGTCGCAGTACAACCGTCTGGGGCTTCGAGAGACTGCTGGGATCGGCACATCTGTGGTAGTGGTCCGAGCTACAGACCCCGACACTGGGGATGGGGGCGCTGTGGCCTATTCTCTGGTCTCTGGCTCTGATCGTAAATTTGAGGTGGACGTGAGTACTGGTCTGCTAACCACGGTGGACTATTTGGACTACGAGACCAAGACGAGTTATTTAATGAACGTCTCAGCCACAGATCAGTCACCGCCATTCCACCGCAGCTACTGCACCGTGTACGTCACGTTACTCAATGAACTGGACGAAGCGGTGGCCTTTCTTTCAGCTGGATATGAAGTTTCACTGAGAGAGAACATCGCTACAGGAACAGAGGTGGTGCAGGTGAAGGCGCAATCCGCTGATAACCTGAACCAGCTGTCGTACCGATTTGACCCCGACACCTCGCCTGCTGCCCTCGCGCTCTTTAAGATTGACAGTGTCACGGGTCGTATCACTGTGACGGGACTGTTGGACAGAGAGCGGGGCGATTCATACACACTCACTGTTGTGGCTGATGATGGAGGACCAAAAAGAGGCTCCACTGTGGTAGTGTCAATCACCATTCTAGATGAAAACGACAACAGCCCAGAATTTGACATCACTTCAGACCTGTCTGTGAATATTCCAGAAGACACAGCCATTGGGAAGAGAGTCGCGGTCGTTTTGGCGCGAGACAAAGACGCTGGACGAAATGGACTGGTAAACTTCACCTTAATCGCGGGGAACATGCAGGACGTGTTTAAGATCAACACAGTCAATAATACGTATGGAGAGGTTTACTTGAACGCCCCTCTGGACCGTGAATCTGTGGACCGCTACCTGCTTAAAGTGCGGGCGATGGATAATGGTTCTCCTCCGAGGTACACCGATGTTTCGCTGACGGTGAATATTGTAGATGTGAACGATAACCCTCCCGTACTGCAGAGTCCTCGAGGGTACAACGTCAGCGTCAGTGAGAATGTGGGTGGTGGAACATCAGTCCTGCGCGTCGTAGCAACAGATCGGGACATTGGAGCTAATGCCATGCTCTCATACTACATCACTGCTGGAAACCAGGACCTGACCTTCAGAATGGACCGCATGACAGGAGAGATAGTGACCCGACCGTCACCTCCAGACAGAGAAAAACAGCAGCAGTACACACTCACTGTCACGGTGGAAGATGACGGCACTCCGACCTTATCAACATCCACCACCGTTTGGGTGCGTATAATTGATGAAAACGACAACGCACCGGAGTTTCCAGAGGAAGAGTACGTGACGGAGCTCAGAGAGGGACCAAACACTGTAGGAGCCATCATCGCCACAGTCACCGCCATTGACCCGGACGAAGGACTCAATGGAACCATCCGTTATGCCATCTCTAAGGGCAACCTGGCACAGACCTTTCAGATCAATAGCGTAACGGGTCAGATCGTGGTGGTTAGTGCGCTGGATTACGAGATCAGCAATGGTCACTATGTGCTGACGGTCACAGCCACAGATCAGTGTCCGATACCCCTGCTCAGACTGACCTCCAGCACCACAGTCCTGGTGAATGTGATAGATGTCAACGATAACCCACCCATCTTCCCGAGGCCATTTGAGGGACCGTTTGAGATCACAGAGGGTCAGCCGGGCCCTCGTGTCTGGACCGTCAAAGCCACAGATGCTGATTCGGGATCCAATGGAAAAGTGGAGTACAGCATCACCGCAGGGGACCTGAAAAATGAGTTTGTAATCTCCTCAGTTGAGGGAGAGTTAAGAGTGAGGAAAGACATTGAGCTTGACAGAGAAACAATTGCCTATTACAACATCACTATTACCGCCAAAGATTTGGGAACGCCTTCGCTCAATGCTACGgTGGTAGTGGGGATTCTAGTGTTGGACATTAATGATAATGACCCCATCCTGCTTAACCTCCCGGCTAACACTAGTGTGAGTGAAGGCGCTGCGGTCCAAACCTTCATCATACAAGTACGAGCACAAGACTCAGACAGTGGCCGCAATGCTCTCCTCACATACAGCATCACTGCCGGGAACAGTGACGGAGCATTTTACATTAATGAGACGTCAGGTGTGGTTCAGGTGAACAGGCCGCTGGACAGAGAGAGAGTTGCTGAATACAGCCTCACCATCACTGTCAAAGACAACCCAGACAACCCTCGCATCGCACGCAGAGACTCAGAGTTGTTGACTGTAACTTTGCTGGATGTGAATGACAACAGGCCTATTTTCAGCCAGTCCAGCTATAGGGGCGAGATCAGTGAAAACTCACCTACAGgCACTACAGTGCTGATTCTGAACGGCCCCGTGTTAGCAGAGGACAAAGACATTGGTGTGAATGCAGTGGTGAGCTACGGTCTGCTGGGAACCAGAGTGGACATCTTTTCCATTGACTCCCGCACAGGCGTGGTATCGGTGCGTGGGGGTGCTGTCCTGGACCGGGAGGCTTTCTCTGTCCCGCGGGTGGAGCTGTTTCTGGTCTCGGTGGATGTGGGAGGTTTAAACAGCAGCGTTCCACTCACAATCACCATCCTCGATGTAAACGACAACCCACCCGTCTTCAACCCATCCAGTTTCACTGTACGCCTGCCTGAGAACAGCCCCACAGGTGTAGTAGTAACCCAGCTCTCTGCCACTGATGCTGACGCTGGTTCTAACGGTTGGCTGCAGTATCGGTTAGACAGCGGTGCTCAGGATCGTTTTATTGTCGATGCTCTCTCTGGTGCTGTTCTGGTGGGCAATGCTACACTGGACAGAGAGGAACGAAGCTCATACCGTCTGGTTGTAATAGCGACTGATCGAGGCACACCTTCACTCTCAGGGACCGCAACATTAACTGTGGTTCTGGACGATGTCAACGACTCGCGTCCTCGTTTCATACAGCCCGTCCAGACCATCAGTGTCAATGAGTCCACTCCACCTGGTGTAGTCGTGGCTACGCTAGCCGCAGAGGATCCTGATTTAAAACCTCGTCTGGAGTATTACATCATCTCTGTGGAAGCAAAGGATGATGGGAATAATGCAGTGGATGGTCTACAGCAGTCGTTTGGGATTGACTTTCACACAGGTGCTGTGTTTGTACGAAACCCCTTGAACCGAGAGCTGGTCGCCACTTTTGAGATAATAGTTTCAGTGCATGACAACGCCAGTGATGTTATTGAAATGTCGGTCAGTGTACCGAATGCCAAACTGACCATAAATGTGCTGGATGTGAATGACAATGCTCCTCGTTTCCGTCCTTTCGGTGTGGCGAACTTTTCCGAGAGCATTCTAGAGGGTGCTGTGCCTGGTACCACACTGCTGTCAGTCACAGCTGTGGATCCTGATAAAGGACCCAACGGACAGATCATCTACCAGCTCCTAAACCTGCCTCGTGGAAACTACATCAGACTTGAAGACCCATCTACAGGTAAAATTGTGGCCAATCGGACGGTGGATTTTGAGCAAGTGCAGTGGTTGAACTTCACGGTTCGTGCTCAGGATCATGGCTCGCCTCCTCGCTTCACTGAGCTTCCTGTCTATCTACGCATCATTGATGTTAATGACAACAACCCAGTTTTTCAGCAGCCGTTATATCAAAAGTCAATATTTGAGGATGTTGCACTCGGCACTATTATAGTGAGCGTGAGAGCGACAGATGCAGACTCCGGCCTGTTCTCTGTCATTGAATACGGGCTAGTAGATGGCGAGGGCAAATTTGGGATCACTCCCACTACGGGTGACATCTACATCTTATCCGCTCTGGACAGAGAAACCAAAGACCGCTACACTCTCACAGCCTACGCCAGGGACAATCCCGGCGGCAGCCCCAATAACCGCAGAGAAAACTCTGTTCAGGTGCAATTGACAGTGCTGGATGTCAATGATTTCCGTCCACGTTTCTCAGAGAGAGTCTTCACCACTAGTGTGTTTGAGAACGAGCCGGTTGGCACATCAGTGATCACTATGAAGGCCACTGACCTCGATGAAGGGGAGAATGCATTACTCACTTACAGTCTACAGGGCCCTGGAGCGGACGCGTTCTCTCTGGATCCTGACACTGGGCTGATTCGCTCTCTGCGGTTACTGCAGAGTTTCGAGAGGTTCAATCTGACGGTGGTGGCGACTGATCAAGGCAGACCTCCTCTCTGGGGGACCGCCAGTCTTCAAATCACTGTCATAGACGTCAACGACAACAGACCGATCTTTGTGCGCCCGGCCAATGGCACCATTATGCACATACTAGAGGAACAGCCTCCTGGACTGGTAGTCTATGAAGTGTTTGCCACAGATGAGGATGAAGGGGTGAACGGAGAGGTTCGCTACAGTTTCCTGCAGACCGGAGCTGGAAACAGAGACTGGGAGAACTTCCATATTGACGCTGTGACAGGAGTGATCACTACTGCGGTTAAGCTGGACAGAGAGAAACAAGCCCTGTACAGCctgGTTGTGGTGGCGTATGACCTAGGGCAGCCTGTCCCTTATGAGACCATGCAGCCACTGCAGGTGGCTCTGTCTGACATTGATGACAATGAACCTGTCTTCCTTAAACCTCCGAGAGGAAGTTTGCCGTATCAGTCTCTGTCTGTACCGGAGCACTCTTCTCCTGGAACTGTTGTGGGTAATGTGACTGGAGCAGTGGATGCAGACGAAGGCTCTAATGCCATCGTCTACTACTTCATCGCAGGAGGTGACACCGGTGGAAACTTTGCTTTGAGTGTTAGTGGTGTTTTACGGGTCAAGAAAGATCTGGATCGGGAAGAAATCCCAGTGTACTCCATCATCGTTAAAGCCTCAAGTAACCGCAACTGGACTCCTCCGAAAGGTCAGAGGTCACAGCGGGCTCAGGTGCTTGACCCCAGCCGTGACCCCACATTACAGGAGGTGAGAATCTTCCTGGAGGACATCAATGACCAGTCACCAAGATTCACGAAGCTGGAGTACACCACAGGTGTTGCTGCAGATGCTAAAGTGGGATCGGATCTGATCCGGGTTCAGGCCATTGACAATGACATTGGCAACAACAGTCTGGTTCTCTATCACATTCTGTCCATCCGCTACATCAAACTGCACTCCAATGACTCTGAAGAAATGGGAAACGTCTTCATCATCGgtgaGACTGACGGAATCATCTGCACGTTTGACCTCTTTATGGCTTACGCTCCGGGTTATTTTATCGTGGAGGTTTTGGCAAGAGATCTGGCCGGACACAGCGACGTAGCTCTGGTGAGCATTTACATTCTGAGAGACGACCAGCGGGTGAAAATCGTCATCAATGAGATCCCAGAGCGAGTCCGGCTCTTTCAGGAGGAGTTCATAAACCTGCTGTCCAACATCACAGGAGCCATAGTCAACACTGATgatgtgcagTTCCATGTGGATAAAAAAGGAAGAGTGAACTTCGCTCAGACTGATGTGCTGATTCATGTGGTCAACAAGCAGACCAACCGTATTCTGGATGTGGAGAAAGTGATTCAGATGATCGACGAGAACAAGGAGCAGTTGAGGAATCTTTTTCGAAACTACAACATTCTTGATGTCCAGCCTGCTGTAACTGCACGCGCACCGGATGACCTCACCACATTACAGatggCCATCATCATTCTGGCAGTTTTACTCTTTCTTGCTGCCATGTTGTTTATCCTGATGAACTGGTATTACCGCACAGTgCATAAAAGGAAGCTGAAGGCAGTAGTTGCAGGCTCCACAGGAAATCAGGGCTTGATGGATATTCTGGATATGCCCAACACTAACAAGTACACGTTTGAAGGAGCAAATCCAGTGTGGCTGGACCCTTTCTGCAGGAATCTGGAGTTAGCAGCCCAGGCGGAGCACGAGGACGACCTTCCTGAAGACCTGAGTGACATTGCAGACCTCTGGAACAGCCCAGCTCGAACACATGGTACATTTGGACGGGAGCCTCAGGCCACTAAACCAGAGGATGACCGATATCTACGAGCTGCTATTCAGGAGTATGACAACATTGCCAAACTAGGGCAAATCATGAGAGAAGGGCCCATTAAGGGCTCGCTGCTCAATGTGGTTTTGGATGACTACCTGAGACTCAAAAAGCTGTTTGCCGCTCGCCTGGTCACCAAGTCAACCAGCCAGGGTGACCGCTCATCAGTCACAGAGCTGATTCAGAGTGACCtggatgaggatgatgaagagcGCATCGGCGGTCGGGGAACCCTTCGCTTCAAGCACAAGCTCCCGATCGAGCTCAGGGGTCCTGATGGGGTACACGCGGTGCACGGCAGCACGGGCACACTGTTAACCTCTGACCTCAACAGCCTGCCCGAAGATGACCAGCGGGCTCTGGCTCGTTCCCTCGAAGCCTTGCATGCAGACGGCGGCCTGTACGCCGAACGCAACGCCCGAACAGAGTCCGCCAAATCAACACCGTTACACAGAAACAAAGGCAGCGACACCCTGTCTGAAAGTCCGTTAGAGATCACAGAGTTATGACTAGCCGAGGCCTCGCTGGTCTGAGAACACTACAGCGTGCACGTCACTCCTGGCTCTCGCTTTTTCAATCCTAAACTCTTTCCTGGTTCAGGTTTGTGAGCGCCAGGCTGTGAGGAaagtgtgtaggtgtgtgtgtgtggactctgAATGCCTCAAATCAAGGGCAGCTCAACATGTCAGGGCTATTTCATGAGACTTtaaccacacacactcaatctACACAGAGGAACCAATGCACTCTCAGACCAGTGGAAGGCCGAATATGGActctagttttttgtttttgttttagtttagtcaTATTTGAATTGGGCACAAGAAATGAATgtgatgtgtgtctgtgtgtttgaacGGCGTTTGAGAGCATATCTctagggcttttcacacttgtACATTGGAGGAATTATGGAACAGGGTTTGGCGCTGTATATTGCAGTGCTGGAGATATATAGTGTGAATCAATGCAGAACTAGAAGGTGTGCAGTtcaacaaccaaacaaacctaaatTAAATCATTCGGATATTca

Function

symbol description
cdh23 Enables transmembrane transporter activity. Acts upstream of or within several processes, including detection of mechanical stimulus involved in sensory perception of sound; equilibrioception; and mechanoreceptor differentiation. Located in cilium. Is expressed in nervous system and otic vesicle. Human ortholog(s) of this gene implicated in Usher syndrome type 1D; autosomal recessive nonsyndromic deafness; autosomal recessive nonsyndromic deafness 12; and pituitary adenoma 5. Orthologous to human CDH23 (cadherin related 23).

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0060117 auditory receptor cell development biological_process
GO:0050910 detection of mechanical stimulus involved in sensory perception of sound biological_process
GO:0060122 inner ear receptor cell stereocilium organization biological_process
GO:0035315 hair cell differentiation biological_process
GO:0050957 equilibrioception biological_process
GO:0050974 detection of mechanical stimulus involved in sensory perception biological_process
GO:0061512 protein localization to cilium biological_process
GO:0007605 sensory perception of sound biological_process
GO:0007626 locomotory behavior biological_process
GO:0035678 neuromast hair cell morphogenesis biological_process
GO:0030030 cell projection organization biological_process
GO:0098742 cell-cell adhesion via plasma-membrane adhesion molecules biological_process
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0032420 stereocilium cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005929 cilium cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016342 catenin complex cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0045296 cadherin binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins
ko04515 Cell adhesion molecules

ZFIN:

id description
ZDB-GENE-040513-7 Enables transmembrane transporter activity. Acts upstream of or within several processes, including detection of mechanical stimulus involved in sensory perception of sound; equilibrioception; and mechanoreceptor differentiation. Located in cilium. Is expressed in nervous system and otic vesicle. Human ortholog(s) of this gene implicated in Usher syndrome type 1D; autosomal recessive nonsyndromic deafness; autosomal recessive nonsyndromic deafness 12; and pituitary adenoma 5. Orthologous to human CDH23 (cadherin related 23).

Ensembl:

ensembl_id ENSDARG00000007561

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012197 True 9179 mRNA 0.51 55 43050562 43213012

Neighbor

gene id symbol gene type direction distance location
XLOC_006205 cdh23 coding upstream 38706 42762226 ~ 43011856 (+)
XLOC_006206 NA coding upstream 230847 42819345 ~ 42819715 (+)
XLOC_006204 mrpl14 coding upstream 371521 42676202 ~ 42679041 (+)
XLOC_006203 mlh1 coding upstream 432923 42602406 ~ 42617639 (+)
XLOC_006202 NA coding upstream 499128 42543960 ~ 42551434 (+)
XLOC_006208 smoc2 coding downstream 34924 43247936 ~ 43325839 (+)
XLOC_006209 dact2 coding downstream 187431 43400443 ~ 43407199 (+)
XLOC_006210 NA coding downstream 377755 43590767 ~ 43610001 (+)
XLOC_006211 zfyve21 coding downstream 426855 43639867 ~ 43659541 (+)
XLOC_006212 NA coding downstream 641608 43854620 ~ 43855787 (+)
XLOC_006197 CABZ01080781.1 non-coding upstream 1008220 42042226 ~ 42042342 (+)
XLOC_006194 NA non-coding upstream 1187531 41859004 ~ 41863031 (+)
XLOC_006193 NA non-coding upstream 1196178 41821631 ~ 41854384 (+)
XLOC_006213 NA non-coding downstream 660425 43873437 ~ 44113266 (+)
XLOC_006214 NA non-coding downstream 847012 44060024 ~ 44060628 (+)
XLOC_006215 CU138544.1 non-coding downstream 887833 44100845 ~ 44100965 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_07939719_07956224 CDH23 coding CI01180000 null 7939192 ~ 7957335 (+)