XLOC_006202


Basic Information

Item Value
gene id XLOC_006202
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 42543960 ~ 42551434 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012191
GTCAGTGTGTTAATATGCTGCTAAACCTGTACGTCTGGCTCAGTTCCTCAGCTTCTTCTTATAAACAGCTCTGAGCAGCACACAAGAGGagctcacaacacacacacagagagagagagaaatcacaATGCTGTATATTTTGGGGATTGTTTTGGGGCTCGTTGGCATCATCAAGTGCATGTCACATGGCCTGAGTCAGATTCAAACCAAAGCCGGAAATGCCTCTCAAGACAAAAACTTGCTTTACAAAAATAAGAGAATGAAAGATCAGGAGGTTTACCTCATCATTAAGCTCCTGACCGCTGGGCTGGTGGACGCAGACCCAAACACCCTGCACCACATTAAAGAATACAGAGACCTGAGAGGAAGCTCAACCTGAGGGAGGAAATGACAGCAGGATGATTATCTGAGAGGGAAACCCGAGAGCGGGGGTTTACCTTTATTTAAGAGGAAGGGGGAAGTCCTTGGAATGACCACAAAATGTTTTACTAAGAACATCTGGATCTGTTCTGAAAGACTCCAGTGAAATGAATAGAAAAGACTGATAATTATTCATCGATTCTCAAGATCAACAGATATTTTCTGGAGTTAGTTGAAATGATCCACTGTGAACACTCATCACATCCAGTGGGCATTCAAACACTCCTGCACTCATTCAGTTTAATGGTCAGCtaaagaaagagagagatcgTTAAATTGTATATCACagaaattaaagtacaaaatcagtcactggggcggtaccttACCAAAAAGAAACCTACTTACGTTTTTATTCCTAACACGTACTTAAAGGGAAATAGCAATACctaaaaaaagtataaatgtgTAACAGTGTACCTCATAGtataccttaaaggtacaaaagagTACGCTAAAGTTGActttaagttacttttattcaatcaACAAGATTTGTTTTGACTGCAAATggcacaggcttctcccaaatgATAGTAGGGCAATGTACATGAGGCATCactgtgggaaaaaaaaatatttacatttgaacaaaaactttgtcagaatttgaataataatgtatgaataatttcgggcttgactgtaaatatatgaatatatttataatataaaatgtaaagagaagaaaaaaactgtAAGGAAAAAAGAtcagtaatttatatatatataaatatacagttgaagttagagttATTGGCCACCCTGTTTATtcttgtccccaatttctgtttaacagagagcagatttttttttcaacacatttctaaacataatagttttaataactgattgctaataactgatttattttatctttgctatgatgacagtacataatttactagatattttcgagacactttttaaagtgacatttaaaggcttaactaggctaattaggttaactagacaggttagagtaattaggcaagttattgtataacgatggtttgttctgtagactatcggaaataaaattgcttaagggggctaatagttttaaccttaaatggtttttaaaaaaccaaaaactgcttttgttcaagccaaaataaaacaaataagactttctccagaagaaaaaatattatcacagtttctttgctctgttaagcatcatttgggaaatatttaaaaaagaaaaactaaattcaaagggggctaataattctgacatcaactatataaataaataaataaataaataaatacatggaaAAACATCCCATCTCCATTTagctttacatttttatgtacaaattaatacttttaatatttttaaatatattaacacaACTTtctgaactttaaaaaaatacaacttgAAAATAGTTGAAATGTTTTTACTTTGTTTcctcattcacacagactctttgccgagtcttgtttttccctgtgaagcattacaaagcattttcccttgtttgtcctgccatgttttTATCCTTGGCTTGCttactgttattgttgttttgcctttctaattctgtgtctaataaatgtttAGATAACATT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0003008 system process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0005509 calcium ion binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012191 True 1998 lncRNA 0.34 4 42543960 42551434

Neighbor

gene id symbol gene type direction distance location
XLOC_006201 cpeb3 coding upstream 71900 42406883 ~ 42472060 (+)
XLOC_006200 ide coding upstream 193800 42309688 ~ 42350160 (+)
XLOC_006199 opn3 coding upstream 278375 42245221 ~ 42265585 (+)
XLOC_006198 cdc42ep3 coding upstream 400323 42124566 ~ 42143637 (+)
XLOC_006197 CABZ01080781.1 coding upstream 501618 42042226 ~ 42042342 (+)
XLOC_006203 mlh1 coding downstream 50972 42602406 ~ 42617639 (+)
XLOC_006204 mrpl14 coding downstream 124768 42676202 ~ 42679041 (+)
XLOC_006205 cdh23 coding downstream 210792 42762226 ~ 43011856 (+)
XLOC_006206 NA coding downstream 267911 42819345 ~ 42819715 (+)
XLOC_006207 cdh23 coding downstream 499128 43050562 ~ 43213012 (+)
XLOC_006194 NA non-coding upstream 680929 41859004 ~ 41863031 (+)
XLOC_006193 NA non-coding upstream 689576 41821631 ~ 41854384 (+)
XLOC_006191 NA non-coding upstream 744210 41796967 ~ 41799750 (+)
XLOC_006189 NA non-coding upstream 1554599 40988415 ~ 40989361 (+)
XLOC_006210 NA non-coding downstream 1039333 43590767 ~ 43610001 (+)
XLOC_006212 NA non-coding downstream 1303186 43854620 ~ 43855787 (+)
XLOC_006213 NA non-coding downstream 1322003 43873437 ~ 44113266 (+)
XLOC_006214 NA non-coding downstream 1508590 44060024 ~ 44060628 (+)

Expression


Co-expression Network