XLOC_006191


Basic Information

Item Value
gene id XLOC_006191
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 41796967 ~ 41799750 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013667
TTTCCGTTCCTGTAGCCGGACATTGCAGTTCAATACATTCTGGCTAACAGCTCGATGCAGTGGCTTATTGTGGGTGCGTCACGAGAAGTAAGTGTTCATgtcttctgtgtgtgtgcttctAACACTTAGTATATGGGTTTAGTGTTGTAACGCAAACTTTGAATGACGATCGGACCGCATGATTGCAATTACGTCATCAACGCAGGTGGTGCGCGATTCCAAGCAAACGCCATTATTAACGACGTATTAAAGCACGTATTATCCCCGCAAGTTTATATACCATTGAATTGTGTTGATATGTAAATTAGTCAAGTGTTAAGCAATGTAAATGCCATGTTTACTCAGTATTTGGGCATTGGATCTGTCTCGCATGTATGTGTTAACTCAATGCATATTTAGACCTGATGCTCTGTTAATCTTTACTTATATGCCATAACTGatgttatatatattatgtcaTGTTATATTGTTCTGTATATTATACAATTCCAGTTTAATCATTGTGGTATATTTCTCTCTTGTTTCAAGAAAATACCACAGTATTTACCACAATAACACACGCATGTGCCTTTATGACtgcaaataaatgctgtaaaaaaatcaGCTAACTACAAAGCCTGGCTTGTGCATTCTTACCGACGCCCCCTGGTGATCATATCACAAATAGTAAAGTCAGTGCCATTTAACAAACTCACCAACTGGAGGTATAATTAAATGCAAGTCAAAACTGTTTGCATTTGTTACGTTGAATGCAGAATATCTTGAGTTTTTCCATTGGTGCCCGACCAATCCCGTGTGGCACATCTGGTCTCTGTTAATGCTTCGTTTACACATTTTGTACAATAATATCATCGCATTGAAGTTTGTGTCCAACTCCAAGGGTCCGTTCtacgtacctcgcttaaatgatctaagattatttggcagatcctggatcttttaatcttgataatttatctctcgctaatttggttcttcaaacaagttcgcgaatcagattagaatgtctggatgaactgatctgagatcgctgcgtgtgttgtgaaggacagatctatcgatcctcgaaatcatgatcagcaatgcaacgattgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGATAATTATCTCTCGCTaattggttcttcaaacaagttcgcgaatcagattagaatgtctggatgaactgatctgagatcgctgcgtgtgttgtgaaggacagatctatcgatcctcgaaatcatgatcagcaatgcaacgattggctgacggcacaacagcgtaatgacatcatctgattaatattcaattatccatgtgagcaaaattacatcaaattagcagtcgacggtttgttaaatatgacacgcaagaactttacacatttgttgtgagctgcaggctttactctttcatttgtcaagacaagagtattcatcatgtatttcaatgcaaatcaatgtatttagttctacatttagaaaagattttctttatagtagccgttttttaatcggtgtaaaaaataactggttgtttacaaaagcattttcatattggtaaaggcgtctgcaacttttgtgaagtatcaaatcactggcatattaactatcaaaatatgtttatgactgcataaatgtataattgctttaaaaaaaaattcacatattgtgcatttctattatacacaatttgtactaaagcaatctaaaaagttcatgtcaataagttttctctttgcaccagatggcagtctttgtactttcatttcgagggtgcagattgcataagttttattaatatgtataactttatttattttattaatgactataactttatatatatagttaaaaaatatgtaccattttcccaagtgtatataactactactggaagaaaatatcagaattcggaacatactttctgtattatctttgcttgaactgagccgatctaatcctgtttatatgaattgaacctgcttccgatcaggtttgacctagcagaactgttgccatgacaacaactctcggatcagctttgaagaacgaaacgatcctggatcgtgtcaaatcatcaacatccaaatccagctaactgagtaatccacgtacgaagaacggaccccagaacaGAGTTCagccaaattaaataaacaaacaaacaaacaagtcaaGTTGGCGATCGCATGATTAGAGCAAAAACTGTGAAATTTCGATTTCAGTAGATCTCTAATGTGCAATATGAACCACTGAGTAATCTCCATGAGCCTCTAAGCACCGCACAAGTGCACTGAATAGAGCTTTTTTATCAATAAATGATAGCGCACAGAGGGATTCTGGCAGGGTCTGCTCTCAATTTTGAAGCTCATCACCAGATGACAGCAGGAGAATGTGCACGCGGGGTCCGGGATCTCTTTTGTCCCGTTCATTACACAACCCTCCACATTTAAATCCCATCAGTGGCCAATACTTTTATCTCAATTGTAACAGAAGCCGACCTTTCCTATTTCTCAGAGAGGAGTGATTAGGAAGCAAATGGGATGGAGGAGCAGATGGCATTTTCCCATCAGATGCGGAGCGAAAGGTAACGGAGGAGGAAAGTTACGAACATTTCATCATTGTTACCTCACTCTTGCGAGCGTGTAATGGAGAGATTTCTCTGATTCATCTGAAGGCCTGATGACGGACCAAAGCCTGAGTG

Function

GO:

id name namespace
GO:0010605 negative regulation of macromolecule metabolic process biological_process
GO:0022402 cell cycle process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0051172 negative regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:2001020 regulation of response to DNA damage stimulus biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0051276 chromosome organization biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051301 cell division biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0010569 regulation of double-strand break repair via homologous recombination biological_process
GO:0032268 regulation of cellular protein metabolic process biological_process
GO:0006282 regulation of DNA repair biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013667 True 2784 lncRNA 0.37 1 41796967 41799750

Neighbor

gene id symbol gene type direction distance location
XLOC_006190 dkk1a coding upstream 770569 41022502 ~ 41026398 (+)
XLOC_006189 NA coding upstream 807606 40988415 ~ 40989361 (+)
XLOC_006188 prkg1a coding upstream 841368 40815012 ~ 40955599 (+)
XLOC_006186 BX294129.1 coding upstream 988531 40754580 ~ 40808436 (+)
XLOC_006187 nkx1.2la coding upstream 1021437 40770628 ~ 40775530 (+)
XLOC_006192 CABZ01066611.1 coding downstream 20067 41819817 ~ 41822485 (+)
XLOC_006193 NA coding downstream 21881 41821631 ~ 41854384 (+)
XLOC_006194 NA coding downstream 59254 41859004 ~ 41863031 (+)
XLOC_006195 polr1b coding downstream 117856 41917606 ~ 41940467 (+)
XLOC_006196 cyp1b1 coding downstream 211535 42011285 ~ 42018948 (+)
XLOC_006181 NA non-coding upstream 1377663 40360160 ~ 40419304 (+)
XLOC_006179 NA non-coding upstream 1466593 40327560 ~ 40330374 (+)
XLOC_006177 BX005216.1 non-coding upstream 1827502 39969349 ~ 39969465 (+)
XLOC_006197 CABZ01080781.1 non-coding downstream 242476 42042226 ~ 42042342 (+)
XLOC_006202 NA non-coding downstream 744210 42543960 ~ 42551434 (+)
XLOC_006206 NA non-coding downstream 1019595 42819345 ~ 42819715 (+)

Expression


Co-expression Network