XLOC_006186 (BX294129.1)


Basic Information

Item Value
gene id XLOC_006186
gene name BX294129.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 40754580 ~ 40808436 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012175
GTAACGTGATACGGACTCTTCTCATTAGTGCTGTTTACAAAGGTCATTTAAACCTGACCAGTGTCATTGAGTCCTGCAGAGATTTGAGCGCTTATACCCTGACAGCTGATCTCTTCATAAAACACAGCACCACAGGGAGCCATTTATGACCGACGCTATAAACACCAATAGaattttggtGATTTAGCGCATCGGTGGCCATCATCTGTCATATGGAGCAGAGCAAAGCAGTTGACGTTCCACAACAAGATGGCATCAGGAatcgcataataagtccttaggagagaaaaacacagcgcaaatttcaaactacagttgGTCAAATCATTACAAAACAGTAGGACAGACGCCAATAGAAATCTGCACTGCGCACTGATTTCTGTCATTTCTACTGACAGTGAAAGACCTCGGCTGAGATGGCCAAAGGCAGAAGGAAATTCAGGCCCTTAACAAATCACCCAGGCACTTTCCACATCTGCTGCATGTCAGCATCTGCCAGACGCGCTCACCCGTCCCGGACGCTCACAGCAAGCCTTCATTACTCCTGCTGCTGAACAGGTCTGACCTGAGATAAAAAAGGAGCACCAGCACATACTTTATGCCTGCCATCAGAGAAGGTTTTTGTTGGACTCTGGAGGAGCAGGTCAGGAATGAAAGGCCATGTTTGACACGGGGAAAGGCCTCCAAAGCTGAGACCCATAAATTCCACCAGATG
>TCONS_00012176
AACGTGATACGGACTCTTCTCATTAGTGCTGTTTACAAAGGTCATTTAAACCTGACCAGTGTCATTGAGTCCTGCAGAGATTTGAGCGCTTATACCCTGACAGCTGATCTCTTCATAAAACACAGCACCACAGGGAGCCATTTATGACCGACGCTATAAACACCAATAGaattttggtGATTTAGCGCATCGGTGGCCATCATCTGTCATATGGAGCAGAGCAAAGCAGTTGACGTTCCACAACAAGATGGCATCAGGAatcgcataataagtccttaggagagaaaaacacagcgcaaatttcaaactacagttgGTCAAATCATTACAAAACAGGTCTGACCTGAGATAAAAAAGGAGCACCAGCACATACTTTATGCCTGCCATCAGAGAAGGTTTTTGTTGGACTCTGGAGGAGCAGGTCAGGAATGAAAGGCCATGTTTGACACGGGGAAAGGCCTCCAAAGCTGAGACCCATAAATTCCACCAGATGTGGGCAGTCTGGGAGAGGAAAGCTGACGCTTCAACACAGCAGAAGATTTCAATGCTCAGCGGCAGAACTGATCAATGACTGACAGAACGTCCTCTGGCCCTGGAGCTCAGAGACATCCGATTGGGTTTCAGCAAGAAGAGAGGCAGAGAGACTGTATAACAGGAATGGGATGAGTAATGTCTGCAGCAGCACCACCCACCAGCTCCACCTCACCCAGCCTGAAATCTAATCGCTCCCTCAGGTGCGCATCGCTCCTCCGCTAATCACTGTGTCATCATTCCCACTGCAGGATCAGCTCctctgtactgtaaataaaaaaagtctgtttttgtattttgtgat
>TCONS_00012177
TCTCATTAGTGCTGTTTACAAAGGTCATTTAAACCTGACCAGTGTCATTGAGTCCTGCAGAGATTTGAGCGCTTATACCCTGACAGCTGATCTCTTCATAAAACACAGCACCACAGGGAGCCATTTATGACCGACGCTATAAACACCAATAGaattttggtGATTTAGCGCATCGGTGGCCATCATCTGTCATATGGAGCAGAGCAAAGCAGTTGACGTTCCACAACAAGATGGCATCAGGAatcgcataataagtccttaggagagaaaaacacagcgcaaatttcaaactacagttgGTCAAATCATTACAAAACAGGCCCTTAACAAATCACCCAGGCACTTTCCACATCTGCTGCATGTCAGCATCTGCCAGACGCGCTCACCCGTCCCGGACGCTCACAGCAAGCCTTCATTACTCCTGCTGCTGAACAGTGCCATGTAGCAGTAATCTTCAAAAGAGTGATGTTTAAGCAGTTTCCCATTCTATTGTTCATCTGTACTCTGGATAAGAATAAGGGGACACagacaaacaaagaaaacacGCCCATCCGTAAACAGATCTCCACCTCAAGACGCAACTACCTGAATGATCAGACATTTAGCAGACCGTCCCAGTGCTCTGATGAGTTTATGGGTTAG
>TCONS_00012178
GTTTACAAAGGTCATTTAAACCTGACCAGTGTCATTGAGTCCTGCAGAGATTTGAGCGCTTATACCCTGACAGCTGATCTCTTCATAAAACACAGCACCACAGGGAGCCATTTATGACCGACGCTATAAACACCAATAGaattttggtGATTTAGCGCATCGGTGGCCATCATCTGTCATATGGAGCAGAGCAAAGCAGTTGACGTTCCACAACAAGATGGCATCAGGAatcgcataataagtccttaggagagaaaaacacagcgcaaatttcaaactacagttgGTCAAATCATTACAAAACAGGCCCTTAACAAATCACCCAGGCACTTTCCACATCTGCTGCATGTCAGCATCTGCCAGACGCGCTCACCCGTCCCGGACGCTCACAGCAAGCCTTCATTACTCCTGCTGCTGAACAGGTCTGACCTGAGATAAAAAAGGAGCACCAGCACATACTTTATGCCTGCCATCAGAGAAGGTTTTT
>TCONS_00013665
GTTTACAAAGGTCATTTAAACCTGACCAGTGTCATTGAGTCCTGCAGAGATTTGAGCGCTTATACCCTGACAGCTGATCTCTTCATAAAACACAGCACCACAGGGAGCCATTTATGACCGACGCTATAAACACCAATAGaattttggtGATTTAGCGCATCGGTGGCCATCATCTGTCATATGGAGCAGAGCAAAGCAGTTGACGTTCCACAACAAGATGGCATCAGGAatcgcataataagtccttaggagagaaaaacacagcgcaaatttcaaactacagttgGTCAAATCATTACAAAACAGGCCCTTAACAAATCACCCAGGCACTTTCCACATCTGCTGCATGTCAGCATCTGCCAGACGCGCTCACCCGTCCCGGACGCTCACAGCAAGCCTTCATTACTCCTGCTGCTGAACAGGTCTGACCTGAGATAAAAAAGGAGCACCAGCACATACTTTATGCCTGCCATCAGAGAAGGTTTTTGTTGGACTCTGGAGGAGCAGGTCAGGAATGAAAGGCCATGTTTGACACGGGGAAAGGCCTCCAAAGCTGAGACCCATAAATTCCACCAGATGTGGGCAGTCTGGGAGAGGAAAGCTGACGCTTCAACACAGCAGAAGATTTCAATGCTCAGCGGCAGAACTGATCAATGACTGACAGAACGTCCTCTGGCCCTGGAGCTCAGAGACATCCGATTGGGTTTCAGCAAGAAGAGAGGCAGAGAGACTGTATAACAGGAATGGGATGAGTAATGTCTGCAGCAGCACCACCCACCAGCTCCACCTCACCCAGCCTGAAATCTAATCGCTCCCTCAGGTGCGCATCGCTCCTCCGCTAATCACTGTGTCATCATTCCCACTGCAGGATCAGCTCctctgtactgtaaataaaaaaagtctgtttttgtattttgtgat

Function

GO:

id name namespace
GO:0005768 endosome cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092014

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012175 False 715 lncRNA 0.47 6 40754580 40800763
TCONS_00012176 False 835 lncRNA 0.47 5 40754582 40808436
TCONS_00012177 False 642 lncRNA 0.45 5 40754599 40768087
TCONS_00012178 False 487 lncRNA 0.46 5 40754612 40800671
TCONS_00013665 True 921 lncRNA 0.48 6 40754612 40808436

Neighbor

gene id symbol gene type direction distance location
XLOC_006185 ankrd2 coding upstream 13575 40729618 ~ 40741005 (+)
XLOC_006184 hps1 coding upstream 37878 40686133 ~ 40716702 (+)
XLOC_006183 hpse2 coding upstream 86503 40501455 ~ 40668077 (+)
XLOC_006182 got1 coding upstream 297585 40437550 ~ 40456995 (+)
XLOC_006181 NA coding upstream 335276 40360160 ~ 40419304 (+)
XLOC_006188 prkg1a coding downstream 6576 40815012 ~ 40955599 (+)
XLOC_006189 NA coding downstream 179979 40988415 ~ 40989361 (+)
XLOC_006190 dkk1a coding downstream 214066 41022502 ~ 41026398 (+)
XLOC_006191 NA coding downstream 988531 41796967 ~ 41799750 (+)
XLOC_006192 CABZ01066611.1 coding downstream 1011381 41819817 ~ 41822485 (+)
XLOC_006179 NA non-coding upstream 424206 40327560 ~ 40330374 (+)
XLOC_006177 BX005216.1 non-coding upstream 785115 39969349 ~ 39969465 (+)
XLOC_006176 NA non-coding upstream 880952 39845264 ~ 39873628 (+)
XLOC_006175 NA non-coding upstream 1027116 39684471 ~ 39727464 (+)
XLOC_006193 NA non-coding downstream 1013195 41821631 ~ 41854384 (+)
XLOC_006194 NA non-coding downstream 1050568 41859004 ~ 41863031 (+)
XLOC_006197 CABZ01080781.1 non-coding downstream 1233790 42042226 ~ 42042342 (+)

Expression


Co-expression Network