XLOC_006189



Basic Information


Item Value
gene id XLOC_006189
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 40988415 ~ 40989361 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00013666
ATCAGACCTCACATTAAATCAAGGAGGAGATGAGAGATGTCGTCCTCTGTTGCTGGTCTATCTATAATTAAGAGAAAGAGCTCATCCAGGAGTGCAAAtgtgggaTTGCACAAAGAATTGCTGTCTGCCAGAGGAATGACCAACCATGAGGACTTCTGCCTTGTCTTGGAGGATGAGTGAGTCAGGACTCATGGCTAGCTTAGAAAATCTAGAATTGCTGAACTGGATTTATgcaaatattccccaaattaaaatcacttacaaagaAACGTATATTTCTGAGACAAATTCACTGCTACAACCTTTTGGGGAAATTCActgcattgattgattgattgtgttgCTAATATTTGAGATGCAGCTTTTATACTGGTTTTATATGTTATGCAATATACACATTATGTCAGATTTTGTCTAAAATGTGAATATTCCTACAAAAGAAAgttgacaaacatttttttctatggCATGGATAAAGAAATTTTTATCTGAGATTAACATTGCTGTAAACTTGGTTTGTTTAacattgtacaatttttttttaaatcagtggaAC

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00013666 True 556 lncRNA 0.35 2 40988415 40989361

Neighbor


gene id symbol gene type direction distance location
XLOC_006188 prkg1a coding upstream 32816 40815012 ~ 40955599 (+)
XLOC_006186 BX294129.1 coding upstream 179979 40754580 ~ 40808436 (+)
XLOC_006187 nkx1.2la coding upstream 212885 40770628 ~ 40775530 (+)
XLOC_006185 ankrd2 coding upstream 247410 40729618 ~ 40741005 (+)
XLOC_006184 hps1 coding upstream 271713 40686133 ~ 40716702 (+)
XLOC_006190 dkk1a coding downstream 33141 41022502 ~ 41026398 (+)
XLOC_006191 NA coding downstream 807606 41796967 ~ 41799750 (+)
XLOC_006192 CABZ01066611.1 coding downstream 830456 41819817 ~ 41822485 (+)
XLOC_006193 NA coding downstream 832270 41821631 ~ 41854384 (+)
XLOC_006194 NA coding downstream 869643 41859004 ~ 41863031 (+)
XLOC_006181 NA non-coding upstream 569111 40360160 ~ 40419304 (+)
XLOC_006179 NA non-coding upstream 658041 40327560 ~ 40330374 (+)
XLOC_006177 BX005216.1 non-coding upstream 1018950 39969349 ~ 39969465 (+)
XLOC_006176 NA non-coding upstream 1114787 39845264 ~ 39873628 (+)
XLOC_006197 CABZ01080781.1 non-coding downstream 1052865 42042226 ~ 42042342 (+)
XLOC_006202 NA non-coding downstream 1554599 42543960 ~ 42551434 (+)

Expression



Co-expression Network