XLOC_006185 (ankrd2)


Basic Information

Item Value
gene id XLOC_006185
gene name ankrd2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 40729618 ~ 40741005 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012174
aatggatgaaaacatcctgTGGGCGACGGCTGTGGTGGACAGAAGAGCAGCTCTTGATAAACGTGAGGAGAAGCGTCGAGCTCGGGCTCGGAAGTTGGGGATTTTGGTTGTGGATGCGGGAGCCGAAGGAGGGAATGTATCTGTCAATCAAAGTCTTGCAGATATTCAGGATGAAGAACGAGTGAGGAAGATCTCCTCTGATCTGAGGCGTGAGATTGTTGATCTAGGAGGCGCAGAGAACATTATTGAGCTGTGCacacagaagaagaagatcaAGAACAAGACAACACTTTCCAAAGACATAACGAATGTTTCTGGAGCTGTGGAGCCAGAGGAGTTTTTAAAAGCAGCAGCTCAGGGAAAGATGGAAGTAGTGGAAAGGTTTCTGGACGATGGGGGAGATCCAAACACCTGTGATGAGtTCAGGAAAACAGCACTGCATCGAGCTGCTTTgcaaaatcatactaaaatagtGGAAAAATTACTGGACAAAGGAGCTGACATCAATTTTAAAGACAGGCTGGGCTGCAGGGCTGTGCATTGGGCTTGCAGAGGTGGAAGTCTCTCAGCATTAACAGTTCTTCAGGACAGAGGAGCAGACATCAACGTCAGAGACAAACTGCTCAGCTCACCTTTACATGTGGCCACAAGAACGGGTCACAGCGATGTGGTGCAACATCTTTTAGACAGCGGAATCAATATTAATGCCAAGGATTGGGAAGGAGACACGGTTCTACATGACGCTGTCAGATTTAATCGATATAAAATTGTCAAACAGCTCATCCTGGCAGGAGCCGATATGCAGATCAAGAATGCTGAGGGCATTACAGCCACTGAACAAGTGAAGCAGTGGCAGTTTGACACTAAAGAGACACTGGAGAAGCTGGA

Function

symbol description
ankrd2 Predicted to enable RNA polymerase II-specific DNA-binding transcription factor binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in heart and skeletal muscle. Orthologous to human ANKRD2 (ankyrin repeat domain 2).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-090313-383 Predicted to enable RNA polymerase II-specific DNA-binding transcription factor binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in heart and skeletal muscle. Orthologous to human ANKRD2 (ankyrin repeat domain 2).

Ensembl:

ensembl_id ENSDARG00000002722

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012174 True 888 mRNA 0.47 9 40729618 40741005

Neighbor

gene id symbol gene type direction distance location
XLOC_006184 hps1 coding upstream 12916 40686133 ~ 40716702 (+)
XLOC_006183 hpse2 coding upstream 61541 40501455 ~ 40668077 (+)
XLOC_006182 got1 coding upstream 272623 40437550 ~ 40456995 (+)
XLOC_006181 NA coding upstream 310314 40360160 ~ 40419304 (+)
XLOC_006180 slc25a28 coding upstream 375305 40334727 ~ 40354313 (+)
XLOC_006186 BX294129.1 coding downstream 13575 40754580 ~ 40808436 (+)
XLOC_006187 nkx1.2la coding downstream 29623 40770628 ~ 40775530 (+)
XLOC_006188 prkg1a coding downstream 74007 40815012 ~ 40955599 (+)
XLOC_006189 NA coding downstream 247410 40988415 ~ 40989361 (+)
XLOC_006190 dkk1a coding downstream 281497 41022502 ~ 41026398 (+)
XLOC_006179 NA non-coding upstream 399244 40327560 ~ 40330374 (+)
XLOC_006177 BX005216.1 non-coding upstream 760153 39969349 ~ 39969465 (+)
XLOC_006176 NA non-coding upstream 855990 39845264 ~ 39873628 (+)
XLOC_006175 NA non-coding upstream 1002154 39684471 ~ 39727464 (+)
XLOC_006191 NA non-coding downstream 1055962 41796967 ~ 41799750 (+)
XLOC_006193 NA non-coding downstream 1080626 41821631 ~ 41854384 (+)
XLOC_006194 NA non-coding downstream 1117999 41859004 ~ 41863031 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_02381631_02386668 NA coding CI01000012 null 2381348 ~ 2386668 (-)