XLOC_006211 (zfyve21)


Basic Information

Item Value
gene id XLOC_006211
gene name zfyve21
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 43639867 ~ 43659541 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012201
TATGTTGAAGCGGTGTCCGTGCGGCTGGTAGGGCGGCTGATGTCTGCTCCGTTCTTCTCTCCAGCAGCAGCTGCGCACTCATAAACACAAACATGTCCGCTGTTCCTGACGGCAAAAAGCTGGTCCGGAGCCCGAGCGGACTCCGCATGGTACCGGAGAACGGCGCGTTCAACAGTCCGTTTACCCTGGACGAGCCGCAGTGGGTTCCGGATAAAGAGTGCCCCAGATGTATGCAGTGTGACACCAAGTTTGATTTCATTACCAGGAAGcatcaCTGCCGGCGCTGCGGTCGGTGTTTCTGTGATAAATGCTGCAGTCAGAAAGTGGCTCTGCCCAGGATGTGTTTTGTGGATCCGGTGAGGCAGTGTGCCGAATGCAGTCTCATCTCGCAGAAGGAGGTGGAGTTTTACGACAAACAGCTTAAAGTGCTCACTGCCGGAGGAACATTTGTGGTCAAAGTCGGTTCTTCAGAGAAATCAGAAACTATGGTTTGCCGTTTGTCCAATAATCACAGATATCTCTTCCTAGATGGCAACAGTCATTTTGAAGTGGAGCTGTCTCGCATTTCCAGCATGCAGGTTTTGACTGAGGGATCGACCCCTGGAGGTGGTACGCTCCGGGCCAGCGGGATGGTGCTTCAGTACAAGCCACCGGGATCTCTAGACCTTCAGCAGCTCAATATGGACACTGCTGATGACAAGCGCATCGCGTCTGCCTGGCTCGCAGCCATGCACAAAGCTGCCAAACTGTTGTATGAGTCAAAGGACCAGTGAAATGCCCGAAAAAGCACACGTCTGGAGACGAAGAGGGAtggacagaacagaacagaaaggAGGAGAGAGTGAGAGATGGAGAGATCCAAACCAAGTATTATGTGTTATTCAGTCTTTCTTGTACTCTAAGATGCTTGTATGATTTCTATTCAGTCTTTTGCTTCTACTCCCTGCCAAGACAGACCAGATTTACTTACAACCCTCTCTGTCTATGCCAAGGGGAGGACCAAGATTTTGACGATTCTCGTGCAATATGGACATgtatgataatatatataaacgCACCATTTAACAGATGCTTTAAGTGTAGTCTCACGTATCAAAgttttgtaaacaaaatatattttgtcagATATTCTTATTTTAACACTAAAGGCTGTGTATCTACTTTTTACTGCCCAAGTATTTACGATATgtagtgtgtttttttctttcttaacaTATATTTGAAACACTTTTGGAATTGTTTTTGTTTCCTACACTACAGAAGGATGTTTCATTTGTTTAGTACTGTGGTTGTGTTTGCGGAGCAAGATATCCCTTTTTTAGAAAACTGAAATTAGAGCAGCCAGACTGCCAGGACTCATATTAAACTTTGTTCTAGGTCATCAGGTTTGGTTTGCTAATTTTCAATTTTCAGTATGCACCAAATAAACATTGAGTCCACAACTGAC
>TCONS_00012202
ATAAACACAAACATGTCCGCTGTTCCTGACGGCAAAAAGCTGGTCCGGAGCCCGAGCGGACTCCGCATGGTACCGGAGAACGGCGCGTTCAACAGTCCGTTTACCCTGGACGAGCCGCAGTGGGTTCCGGATAAAGAGTGCCCCAGATGTATGCAGTGTGACACCAAGTTTGATTTCATTACCAGGAAGcatcaCTGCCGGCGCTGCGGTCGGTGTTTCTGTGATAAATGCTGCAGTCAGAAAGTGGCTCTGCCCAGGATGTGTTTTGTGGATCCGGTGAGGCAGTGTGCCGAATGCAGTCTCATCTCGCAGAAGGAGGTGGAGTTTTACGACAAACAGCTTAAAGTGCTCACTGCCGGAGGAACATTTGTGGTCAAAGTCGGTTCTTCAGAGAAATCAGAAACTATGGTTTGCCGTTTGTCCAATAATCACAGATATCTCTTCCTAGATGGCAACAGTCATTTTGAAGTGGAGCTGTCTCGCATTTCCAGCATGCAGGTTTTGACTGAGGGATCGACCCCTGGAGAGAAAGATATATGCTCGTATACGAGTTTGCTGGACAATCAAATATCTGAAGGTGGTACGCTCCGGGCCAGCGGGATGGTGCTTCAGTACAAGCCACCGGGATCTCTAGACCTTCAGCAGCTCAATATGGACACTGCTGATGACAAGCGCATCGCGTCTGCCTGGCTCGCAGCCATGCACAAAGCTGCCAAACTGTTGTATGAGTCAAAGGACCAGTGAAATGCCCGAAAAAGCACACGTCTGGAGACGAAGAGGGAtggacagaacagaacagaaaggAGGAGAGAGTGAGAGATGGAGAGATCCAAACCAAGTATTATGTGTTATTCAGTCTTTCTTGTACTCTAAGATGCTTGTATGATTTCTATTCAGTCTTTTGCTTCTACTCCCTGCCAAGACAGACCAGATTTACTTACAACCCTCTCTGTCTATGCCAAGGGGAGGACCAAGATTTTGACGATTCTCGTGCAATATGGACATgtatgataatatatataaacgCACCATTTAACAGATGCTTTAAGTGTAGTCTCACGTATCAAAgttttgtaaacaaaatatattttgtcagATATTCTTATTTTAACACTAAAGGCTGTGTATCTACTTTTTACTGCCCAAGTATTTACGATATgtagtgtgtttttttctttcttaacaTATATTTGAAACACTTTTGGAATTGTTTTTGTTTCCTACACTACAGAAGGATGTTTCATTTGTTTAGTACTGTGGTTGTGTTTGCGGAGCAAGATATCCCTTTTTTAGAAAACTGAAATTAGAGCAGCCAGACTGCCAGGACTCATATTAAACTTTGTTCTAGGTCATCAGGTTTGGTTTGCTAATTTTCAATTTTCAGTATGCACCAAATAAACATTGAGTCCACAACTGAC
>TCONS_00012203
ATGTCCGCTGTTCCTGACGGCAAAAAGCTGGTCCGGAGCCCGAGCGGACTCCGCATGGTACCGGAGAACGGCGCGTTCAACAGTCCGTTTACCCTGGACGAGCCGCAGTGGGTTCCGGATAAAGAGGTAAAGAAGATCGATCACTGATTATTgggatggtgatgatgatgatgctttgGGCGTTGTTTGCTTAAGGCAAGAAGAGCCAGTGGAAAATATTTGCTAACTTTCGCAGATGGTACTACAAAGACTGCCCCAGATGTATGCAGTGTGACACCAAGTTTGATTTCATTACCAGGAAGcatcaCTGCCGGCGCTGCGGTCGGTGTTTCTGTGATAAATGCTGCAGTCAGAAAGTGGCTCTGCCCAGGATGTGTTTTGTGGATCCGGTGAGGCAGTGTGCCGAATGCAGTCTCATCTCGCAGAAGGAGGTGGAGTTTTACGACAAACAGCTTAAAGTGCTCACTGCCGGAGGAACATTTGTGGTCAAAGTCGGTTCTTCAGAGAAATCAGAAACTATGGTTTGCCGTTTGTCCAATAATCACAGATATCTCTTCCTAGATGGCAACAGTCATTTTGAAGTGGAGCTGTCTCGCATTTCCAGCATGCAGGTTTTGACTGAGGGATCGACCCCTGGAGAGAAAGATAT
>TCONS_00012204
ctgtttttctctattaattacatatttattgtTGTTCGACAGAAAGAAGAAGCtcagacaggtttggaacaaatgaaggatgagtaaatgattgcaGAATTCACCAttacatgcaataaaataaaacccTACTAAACACTAACATGGTTGTTTATTTATGTGAAAATTGTTGTCAGGCACACCAGTTAGTGTTTATATTGTAAACTTAAAATGGTCTTGAATTGCAGGAGGAACATTTGTGGTCAAAGTCGGTTCTTCAGAGAAATCAGAAACTATGGTTTGCCGTTTGTCCAATAATCACAGATATCTCTTCCTAGATGGCAACAGTCATTTTGAAGTGGAGCTGTCTCGCATTTCCAGCATGCAGGTTTTGACTGAGGGATCGACCCCTGGAGGTGGTACGCTCCGGGCCAGCGGGATGGTGCTTCAGTACAAGCCACCGGGATCTCTAGACCTTCAGCAGCTCAATATGGACACTGCTGATGACAAGCGCATCGCGTCTGCCTGGCTCGCAGCCATGCACAAAGCTGCCAAACTGTTGTATGAGTCAAAGGACCAGTGAAATGCCCGAAAAAGCACACGTCTGGAGACGAAGAGGGAtggacagaacagaacagaaaggAGGAGAGAGTGAGAGATGGAGAGATCCAAACCAAGTATTATGTGTTATTCAGTCTTTCTTGTACTCTAAGATGCTTGTATGATTTCTATTCAGTCTTTTGCTTCTACTCCCTGCCAAGACAGACCAGATTTACTTACAACCCTCTCTGTCTATGCCAAGGGGAGGACCAAGATTTTGACGATTCTCGTGCAATATGGACATgtatgataatatatataaacgCACCATTTAACAGATGCTTTAAGTGTAGTCTCACGTATCAAAgttttgtaaacaaaatatattttgtcagATATTCTTATTTTAACACTAAAGGCTGTGTATCTACTTTTTACTGCCCAAGTATTTACGATATgtagtgtgtttttttctttcttaacaTATATTTGAAACACTTTTGGAATTGTTTT
>TCONS_00012205
TGGTCAAAGTCGGTTCTTCAGAGAAATCAGAAACTATGGTTTGCCGTTTGTCCAATAATCACAGATATCTCTTCCTAGATGGCAACAGTCATTTTGAAGTGGAGCTGTCTCGCATTTCCAGCATGCAGGTTTTGACTGAGGGATCGACCCCTGGAGGTGGTACGCTCCGGGCCAGCGGGATGGTGCTTCAGTACAAGCCACCGGGATCTCTAGACCTTCAGCAGCTCAATATGGACACTGCTGATGACAAGCGCATCGCGTCTGCCTGGCTCGCAGCCATGCACAAAGTAGGCTGCCAAACTGTTGTATGAGTCAAAGGACCAGTGAAATGCCCGAAAAAGCACACGTCTGGAGACGAAGAGGGAtggacagaacagaacagaaaggAGGAGAGAGTGAGAGATGGA
>TCONS_00012206
ATTTTCTAAAGCAAAACCAGTCTGCATGTTTATCGGGCTGGTCCCTGATTATGCCGCATGTGATGGCCCCTTATTGTGATTAAGTTACATTTAATAAACCTCAGTTCAATTTGTGCATGTGCAGTCATCAGCATTGGTGTTACACTGAAAGGTTTTGTGCAGCCCAGTCTCTAACCTTTGTCCTGTTTTTTTAGGTGGTACGCTCCGGGCCAGCGGGATGGTGCTTCAGTACAAGCCACCGGGATCTCTAGACCTTCAGCAGCTCAATATGGACACTGCTGATGACAAGCGCATCGCGTCTGCCTGGCTCGCAGCCATGCACAAAGTAGGCTGCCAAACTGTTGTATGAGTCAAAGGACCAGTGAAATGCCCGAAAAAGCACACGTCTGGAGACGAAGAGGGAtggacagaacagaacagaaaggAGGAGAGAGTGAGAGATGGAGAGATCCAAACCAAGTATTATGTGTTATTCAGTCTTTCTTGTACTCTAAGATGCTTGTATGATTTCTATTCAGTCTTTTGCTTCTACTCCCTGCCAAGACAGACCAGATTTACTTACAACCCTCTCTGTCTATGCCAAGGGGAGGACCAAGATTTTGACGATTCTCGTGCAATATGGACATgtatgataatatatataaacgCACCATTTAACAGATGCTTTAAGTGTAGTCTCACGTATCAAAgttttgtaaacaaaatatattttgtcagATATTCTTATTTTAACACTAAAGGCTGTGTATCTACTTTTTACTGCCCAAGTATTTACGATATgtagtgtgtttttttctttcttaacaTATATTTGAAACACTTTTGGAATTGTTTT

Function

symbol description
zfyve21 Predicted to enable metal ion binding activity. Orthologous to human ZFYVE21 (zinc finger FYVE-type containing 21).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-030131-1296 Predicted to enable metal ion binding activity. Orthologous to human ZFYVE21 (zinc finger FYVE-type containing 21).

Ensembl:

ensembl_id ENSDARG00000027887

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012201 False 1447 mRNA 0.45 7 43639867 43659541
TCONS_00012202 False 1418 mRNA 0.44 8 43639947 43659541
TCONS_00012203 False 649 nonsense_mediated_decay 0.49 6 43639959 43656324
TCONS_00012204 False 1032 lncRNA 0.40 4 43650393 43659337
TCONS_00012205 False 407 mRNA 0.51 4 43650632 43658947
TCONS_00012206 True 835 lncRNA 0.41 2 43656516 43659337

Neighbor

gene id symbol gene type direction distance location
XLOC_006210 NA coding upstream 29866 43590767 ~ 43610001 (+)
XLOC_006209 dact2 coding upstream 232668 43400443 ~ 43407199 (+)
XLOC_006208 smoc2 coding upstream 314028 43247936 ~ 43325839 (+)
XLOC_006207 cdh23 coding upstream 426855 43050562 ~ 43213012 (+)
XLOC_006205 cdh23 coding upstream 628011 42762226 ~ 43011856 (+)
XLOC_006212 NA coding downstream 195079 43854620 ~ 43855787 (+)
XLOC_006213 NA coding downstream 213896 43873437 ~ 44113266 (+)
XLOC_006214 NA coding downstream 400483 44060024 ~ 44060628 (+)
XLOC_006215 CU138544.1 coding downstream 441304 44100845 ~ 44100965 (+)
XLOC_006216 NA coding downstream 542385 44201926 ~ 44242346 (+)
XLOC_006206 NA non-coding upstream 820152 42819345 ~ 42819715 (+)
XLOC_006202 NA non-coding upstream 1088433 42543960 ~ 42551434 (+)
XLOC_006197 CABZ01080781.1 non-coding upstream 1597525 42042226 ~ 42042342 (+)
XLOC_006194 NA non-coding upstream 1776836 41859004 ~ 41863031 (+)

Expression


Co-expression Network