XLOC_006208 (smoc2)


Basic Information

Item Value
gene id XLOC_006208
gene name smoc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 43247936 ~ 43325839 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012198
atgaacgtttctgactatttattactgtgtaaactgtatattctaaatgcagcaaaaatcagttttttgagtTTTCTGCGTGTGGAGCAGGATAAAGAATGCAACACAGACTGCTCTGGAGCTCCTCGAAAGCCTCTGTGCGCATCAGACGGACGGACCTTCAGTTCCCGCTGCGAGTTTCTCCGTGCAAAGTGCCGTGACCCTCAGCTGGCGGTCAGTCGAGGGCAATGCAAAGATACGCCCAAGTGTGTTGCAGAGAAGAAATACACAGAGCAGCAAGCCAAGAAACTCTTCCCACAGGTTTTTGTGCCTGTCTGCAATCCTGATGGAACCTACAGTGAGGTTCAGTGCCACAGCTACACTGGTTACTGCTGGTGTGTGATGCCCAATGGCAGACCAATCAGCGGCTCTGCAGTAGCCAATAAGAAACCCCAGTGCCAAGGGTCTAAGAACAGTAAAGTAAATCCGAAGGAACCAGGAAAATCAGATCCGTCGACGGTTTTAGTAGTGGAGTCGCAGCCGTCGGTTGACGAGGAAGacatCATCTCTCAGTATCCTACACTCTGGTCAGAGCAGGTCCGCAGTCGACAAAACAGGACCAGAACACAATCGACCTCGTGTGATCAGGAGCAGCTGTCGGCACAGGAAGAAGCAAGACAGCATAAAAACGAAGCGGTTTTCGTGCCTGACTGCGCCAGTGGTGGCCTTTATAAACCCGTCCAGTGTCATCCCTCCACTGGGTACTGCTGGTGTGTCCTGGTGGACACTGGGCGGCCCATACCCGGCACATCCACAAGACATGAACAACCAAAATGTGATGGAAACGCCAGAGCTCATCCAAACAAACCCAAGGACCATTACAGGAGCCGACACCTGCAGGGATGTCCAGGagagaaaaaaactgaatttctGACCAGTGTGTTGGACGCATTATCCACAGACATGGTCCATGCAGTAACTGACCCAGCAGCTGGCGGGAGGATGTTGGAGCCAGACCCCAGCCACACTCTGGAAGAGCGAGTTGTTCACTGGTATTTCAGCCAGCTTGACAAGAATTCCAGTGGGGATATCGGAAAGAAAGAAATCAAACCATTCAAGCGTTTACTCCGCAAGAAATCCAAGCCCAAGAAGTGCGTAAAGAAGTTTGTGGAGTACTGCGACATCAGCAACGATAAAGCCCTGTCTCTGCAGGAACTGATGGGCTGTCTGGGTGTCACTAAGGAAGAGGGTGAGTCTCACTGTTTCCTGAGATGGGCAAAAACAGGTGATGGCACAACATCTAGTAAACTGAACCTGTCAAAGAAACAAGGCTAA
>TCONS_00012199
atgaacgtttctgactatttattactgtgtaaactgtatattctaaatgcagcaaaaatcagttttttgagtTTTCTGCGTGTGGAGCAGGATAAAGAATGCAACACAGACTGCTCTGGAGCTCCTCGAAAGCCTCTGTGCGCATCAGACGGACGGACCTTCAGTTCCCGCTGCGAGTTTCTCCGTGCAAAGTGCCGTGACCCTCAGCTGGCGGTCAGTCGAGGGCAATGCAAAGATACGCCCAAGTGTGTTGCAGAGAAGAAATACACAGAGCAGCAAGCCAAGAAACTCTTCCCACAGGTTTTTGTGCCTGTCTGCAATCCTGATGGAACCTACAGTGAGGTTCAGTGCCACAGCTACACTGGTTACTGCTGGTGTGTGATGCCCAATGGCAGACCAATCAGCGGCTCTGCAGTAGCCAATAAATCCCGACCCCACCAAAACGACGACGGAAACCATAGTCTTTGCACTTTGtactttaaaaacattgtaaattcaCTTTTGTAG

Function

symbol description
smoc2 Predicted to enable calcium ion binding activity. Acts upstream of or within animal organ development and regulation of BMP signaling pathway. Predicted to be located in collagen-containing extracellular matrix and extracellular region. Is expressed in several structures, including digestive system; ectoderm; nervous system; notochord; and optic vesicle. Orthologous to human SMOC2 (SPARC related modular calcium binding 2).

GO:

id name namespace
GO:0042476 odontogenesis biological_process
GO:0030510 regulation of BMP signaling pathway biological_process
GO:0061515 myeloid cell development biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-021031-5 Predicted to enable calcium ion binding activity. Acts upstream of or within animal organ development and regulation of BMP signaling pathway. Predicted to be located in collagen-containing extracellular matrix and extracellular region. Is expressed in several structures, including digestive system; ectoderm; nervous system; notochord; and optic vesicle. Orthologous to human SMOC2 (SPARC related modular calcium binding 2).

Ensembl:

ensembl_id ENSDARG00000088157

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012198 False 1314 mRNA 0.50 17 43247936 43325720
TCONS_00012199 True 507 mRNA 0.47 9 43247936 43325839

Neighbor

gene id symbol gene type direction distance location
XLOC_006207 cdh23 coding upstream 34924 43050562 ~ 43213012 (+)
XLOC_006205 cdh23 coding upstream 236080 42762226 ~ 43011856 (+)
XLOC_006206 NA coding upstream 428221 42819345 ~ 42819715 (+)
XLOC_006204 mrpl14 coding upstream 568895 42676202 ~ 42679041 (+)
XLOC_006203 mlh1 coding upstream 630297 42602406 ~ 42617639 (+)
XLOC_006209 dact2 coding downstream 74604 43400443 ~ 43407199 (+)
XLOC_006210 NA coding downstream 264928 43590767 ~ 43610001 (+)
XLOC_006211 zfyve21 coding downstream 314028 43639867 ~ 43659541 (+)
XLOC_006212 NA coding downstream 528781 43854620 ~ 43855787 (+)
XLOC_006213 NA coding downstream 547598 43873437 ~ 44113266 (+)
XLOC_006202 NA non-coding upstream 696502 42543960 ~ 42551434 (+)
XLOC_006197 CABZ01080781.1 non-coding upstream 1205594 42042226 ~ 42042342 (+)
XLOC_006194 NA non-coding upstream 1384905 41859004 ~ 41863031 (+)
XLOC_006193 NA non-coding upstream 1393552 41821631 ~ 41854384 (+)
XLOC_006214 NA non-coding downstream 734185 44060024 ~ 44060628 (+)
XLOC_006215 CU138544.1 non-coding downstream 775006 44100845 ~ 44100965 (+)

Expression


Co-expression Network