RNA id: TU803017


Basic Information

Item Value
RNA id TU803017
length 222
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G681991
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 7646815 ~ 7647036 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGGCTCAGGTGTGTATTTTTATTGGAATTTTACTATTTCACCCCCATTTCCTTTAATAAATCTTTTTGCACTAGGTACACAAATAATTACACTCAGGACCTTAAGGACAAAAATGTCCTCATAGAAAACCCACTGAAACTGCAATTTTTAATCCCAGGCCCATTTAACTATAAAATGGTGCAGTCTTTGTTAATTGGCTTTGTTTTTGTTTTGTTTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU803016 lncRNA upstream 663 7645821 ~ 7646152 (+) True G681990
TU802877 lncRNA upstream 15661 7629096 ~ 7629573 (+) True G681852
TU803012 lncRNA upstream 19841 7626066 ~ 7626974 (+) True G681986
TU802879 lncRNA upstream 150404 7492495 ~ 7496411 (+) True G681854
TU802854 lncRNA upstream 155418 7413309 ~ 7491397 (+) True G681831
TU803018 lncRNA downstream 121 7647157 ~ 7647374 (+) True G681992
TU803019 lncRNA downstream 654 7647690 ~ 7647940 (+) True G681993
TU802835 lncRNA downstream 40291 7687327 ~ 7713392 (+) True G681823
TU802816 lncRNA downstream 79424 7726460 ~ 7728061 (+) True G681819
TU803079 lncRNA downstream 225920 7872956 ~ 7873231 (+) True G682050
CI01180000_07630010_07630436.mRNA mRNA upstream 15899 7629585 ~ 7630916 (+) False CI01180000_07630010_07630436
CI01180000_07558791_07591349.mRNA mRNA upstream 54923 7558791 ~ 7591892 (+) True CI01180000_07558791_07591349
CI01180000_07508387_07529689.mRNA mRNA upstream 116518 7508069 ~ 7530297 (+) True CI01180000_07508387_07529689
CI01180000_07472651_07489000.mRNA mRNA upstream 157466 7470005 ~ 7489349 (+) True CI01180000_07472651_07489000
CI01180000_07431871_07436446.mRNA mRNA upstream 210190 7430824 ~ 7436625 (+) True CI01180000_07431871_07436446
CI01180000_07655737_07662839.mRNA mRNA downstream 7787 7654823 ~ 7662932 (+) True CI01180000_07655737_07662839
CI01180000_07694615_07695428.mRNA mRNA downstream 47493 7694529 ~ 7695546 (+) False CI01180000_07694615_07695428
CI01180000_07802968_07887251.mRNA mRNA downstream 155932 7802968 ~ 7887251 (+) True CI01180000_07802968_07887251
CI01180000_07939719_07956224.mRNA mRNA downstream 292156 7939192 ~ 7957335 (+) True CI01180000_07939719_07956224
CI01180000_08012978_08021101.mRNA mRNA downstream 365942 8012978 ~ 8021401 (+) True CI01180000_08012978_08021101
TU802812 other upstream 177210 7403147 ~ 7469605 (+) True G681817
TU802641 other upstream 987269 6655846 ~ 6659546 (+) True G681667
TU802663 other upstream 1011826 6632908 ~ 6634989 (+) True G681686
TU802553 other upstream 1167816 6473035 ~ 6478999 (+) True G681592
TU802202 other upstream 2273053 5370410 ~ 5373762 (+) True G681268
TU802830 other downstream 16387 7663423 ~ 7694381 (+) True G681822
TU802826 other downstream 47287 7694323 ~ 7694381 (+) True G681822
TU803281 other downstream 721149 8368185 ~ 8368935 (+) True G682232
TU803553 other downstream 1389381 9036417 ~ 9038892 (+) True CI01180000_09036547_09038313
TU806595 other downstream 3172950 10819986 ~ 10866176 (+) True G685188

Expression Profile