RNA id: TU803012



Basic Information


Item Value
RNA id TU803012
length 909
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G681986
representative True

Chromosome Information


Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 7626066 ~ 7626974 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGGTTTTTGGTCCAAAAATTAGAATCTCTGTTTTTTTCTGAATTTAGTAGTAAGAAATTACTGGTCATCCAATTTTTTTATATCAGCTATGCATTCCGTTAATTTTGTGAATTGGTAAGTTTCGTCAGGGCTCGAAGAAATATAGAGCTGAGTATCATCAGCGTAACAGTGAAAACTAACGCCATGTTTCCTTATGATATCTCCCAAGGGTAGCATGTACAGAGTGAAAAGCAACGGTCCTAGTACTGAGCCTTGCGGTACTCCATATTGAACTTGTGATTGATATGACATCTCTTCGTTTACTACTACAAACTGATAACAGTCAGATAAGTATGATTTGAGCCATGCCAATGCAATTCCACTAATGCCAACATAATTTTCAAGTCTATTCAAAAGAATATTGTTGTCGATAGTGTCAAAAGCAGCACTGAGATCTAGTAACACTAATGAAGAGATACAACCATGATCAGATGATAAGAGCAAATCATTTGTAACTCTAATGAGAGCAGTCTCAGTACTATGGTACAGTCTAAATCCTGACTGGAAATCCTCACAGATACCATTTCTTTCCAAGAAGGAACGTAGTTGCGATGATACTGCCTTTTCTACTATTTTTGACAGAAAAGGTAGATTCGAGATCGGCCTGTAATTGACTAATTCTCTAGGATGAAGTTGTGGTTTTTTAATAAGAGTTTTAATAATAGCCAGCTTAAAATTTTTGGTACATATCCTAGTGATAATGATGAATTAATGATATTAAGAAGAGGATCTATGACCTCTGGAAGCATCTCTTTCAATAGCTTAGTCGGTATAGGGTCTAACATACATGTTGTTGATTTTGATGATTTAACAACTTTAGACAATTCTTCCTGTCCTAAAGCAACGAATGAATGGAATTTTTCCTCAGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU802879 lncRNA upstream 129655 7492495 ~ 7496411 (+) True G681854
TU802854 lncRNA upstream 134669 7413309 ~ 7491397 (+) True G681831
TU802988 lncRNA upstream 144232 7476992 ~ 7481834 (+) True G681963
TU802958 lncRNA upstream 235941 7389908 ~ 7390125 (+) True G681933
TU802942 lncRNA upstream 267201 7358638 ~ 7358865 (+) True G681917
TU802877 lncRNA downstream 2122 7629096 ~ 7629573 (+) True G681852
TU803016 lncRNA downstream 18847 7645821 ~ 7646152 (+) True G681990
TU803017 lncRNA downstream 19841 7646815 ~ 7647036 (+) True G681991
TU803018 lncRNA downstream 20183 7647157 ~ 7647374 (+) True G681992
TU803019 lncRNA downstream 20716 7647690 ~ 7647940 (+) True G681993
CI01180000_07558791_07591349.mRNA mRNA upstream 34174 7558791 ~ 7591892 (+) True CI01180000_07558791_07591349
CI01180000_07508387_07529689.mRNA mRNA upstream 95769 7508069 ~ 7530297 (+) True CI01180000_07508387_07529689
CI01180000_07472651_07489000.mRNA mRNA upstream 136717 7470005 ~ 7489349 (+) True CI01180000_07472651_07489000
CI01180000_07431871_07436446.mRNA mRNA upstream 189441 7430824 ~ 7436625 (+) True CI01180000_07431871_07436446
CI01180000_07403482_07412752.mRNA mRNA upstream 212876 7403482 ~ 7413190 (+) False CI01180000_07403482_07412752
CI01180000_07630010_07630436.mRNA mRNA downstream 2611 7629585 ~ 7630916 (+) False CI01180000_07630010_07630436
CI01180000_07655737_07662839.mRNA mRNA downstream 27849 7654823 ~ 7662932 (+) True CI01180000_07655737_07662839
CI01180000_07694615_07695428.mRNA mRNA downstream 67555 7694529 ~ 7695546 (+) False CI01180000_07694615_07695428
CI01180000_07802968_07887251.mRNA mRNA downstream 175994 7802968 ~ 7887251 (+) True CI01180000_07802968_07887251
CI01180000_07939719_07956224.mRNA mRNA downstream 312218 7939192 ~ 7957335 (+) True CI01180000_07939719_07956224
TU802812 other upstream 156461 7403147 ~ 7469605 (+) True G681817
TU802641 other upstream 966520 6655846 ~ 6659546 (+) True G681667
TU802663 other upstream 991077 6632908 ~ 6634989 (+) True G681686
TU802553 other upstream 1147067 6473035 ~ 6478999 (+) True G681592
TU802202 other upstream 2252304 5370410 ~ 5373762 (+) True G681268
TU802830 other downstream 36449 7663423 ~ 7694381 (+) True G681822
TU802826 other downstream 67349 7694323 ~ 7694381 (+) True G681822
TU803281 other downstream 741211 8368185 ~ 8368935 (+) True G682232
TU803553 other downstream 1409443 9036417 ~ 9038892 (+) True CI01180000_09036547_09038313
TU806595 other downstream 3193012 10819986 ~ 10866176 (+) True G685188

Expression Profile