CI01180000_04292374_04295052 (CFD)


Basic Information

Item Value
gene id CI01180000_04292374_04295052
gene name CFD
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 4291741 ~ 4295131 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_04292374_04295052.mRNA
GCTATATAATCAGTCTCTGCTGCCCCCTTGCGGACATTATATTGAAGCGAACAGAAATTGAGTTGGATTGCTTAGCTTCTCTTCGTGAACTTTGAAAAATGTGTATCAAAATCAACTTAAGCACTACATTAGCTCTCAGTGGGTTTTATTTAGGTTACTCTACAATTTAATAAATATCACCAAATGTGACTACCTAATACAACTGTATGCAGTGCAGTTTTGGAAGAAGGACTGATAAAGTATTTACTCATTATTTAAATTTTGTTGATTTTGAACAAAAGTTACATAGTGTACCTTTAATTATAGATTATTTATTTAAAAATGCCATGGTCACAGTACACTCTTAAAAATAAAGTTTCCTTGTTGGCATCTATCCATGAAGAACCTTTAACATCCATCTTTCAAATGCACAAAAGGCTTTTTTTATAGTGGAAAAAGTTCTTCAGATTATTGATTTATTGCACTCTGTACAAACACTTATGTCCTCTCTTAACTTAGAAAATAACAAAAGACATGATTACAGTAAAGGAAACATTTGGAGGAAAGGGAAAGCGAAAGAGACACAGAGTAGATGTAAAGGAAAAGATAAGATGAAGAAGAAGATTTATGGCATATTCCTGTTTTTTCTTGCCTGATGGGCGATTGGGAAAAGAATGAAAACAGTAAGAACACCCCTACACACCCTCTGCCTCTCTCTGGGCATTATATAAAGCTCAGCCCGCACTCAGTGGTCTTCAGTCTCCGAAGTAGACAACAATCGTTCACTATGAATAGACTGATATTTGCCTCTTTGCTGCTCTATGCAGCATCTCAAACTGGCGAATGCATTACAGGAGGAAGTGAGGCTGATGCTCACTCCCGTCCGTACATGGCTTCACTTCAGTGGAATGGAAAACATGAGTGCGGTGGCTTTCTGATCTCCAGTCAGTGGGTCATGAGTGCAGCACACTGCTTTCAGGACGGGAGGTCGTCCGGTGTTAAGGTTGTGTTGGGTGCTCACTCCCTGTCTGCTGCTGAGGACACTAAACAAACATTTGGTGTTGATGTAGTCTACAGCCATCCTGATTTCACCATAAGCAACTATGACAATGATATTGCTCTGCTCAAGCTGGAAAAGCCAGTCACTGAGAGTTATGCAGTGAAACCAGTGAAATTCCAACGTGATGAAGAGGCTGATCCCAAGGAGTCTGCTGTCGTGGAAACGGCTGGATGGGGCTCTTTGAACAACCTGGGAGGACGACCGGACAAATTGCAAGAGCTCAGTATCACGGTCATGATGCGATTTCTATGTGGTCGCGGTGACTACTATGGAACGAAGTTCACCAGCAACATGCTCTGTGCTGCAGAAAGACGAAAGGACACCTGTGAGGGTGACTCCGGAGGTCCTCTCTTATACAAGGGCGTTGCTGTGGGGATAACCTCTAATGGAGGGAAGAAATGTGGCTCCACCAAAAAGCCTGGACTCTACACGATCATCTCCCACTACACTAGTTGGATTGACAGCATAACCACCCAGTAAAAAAAGCTGTGGAATCCTTTGCATATATAAAGCCATATTTTTTTCATAAGTCCTGTACATCTCATGTATTGCCACATT

Function

symbol description
cfd Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within Notch signaling pathway; complement activation, alternative pathway; and proteolysis. Predicted to be located in extracellular space. Is expressed in adipose tissue; epidermis; periderm; pharyngeal arch; and pleuroperitoneal region. Orthologous to human CFD (complement factor D).

GO:

id name namespace
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01334 CFD; complement factor D

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_04292374_04295052.mRNA True 1597 mRNA 0.42 5 4291741 4295131

Neighbor

gene id symbol gene type direction distance location
CI01180000_04249587_04251719 FOXI2 coding upstream 39290 4249452 ~ 4252451 (+)
CI01180000_04010876_04029709 LETM1 coding upstream 261635 4010876 ~ 4030106 (+)
CI01180000_03906328_03978950 KIAA1109 coding upstream 311893 3906328 ~ 3979848 (+)
CI01180000_03886676_03894240 C22H9ORF72, CLG15H9ORF72, CSGR16H9ORF72, C3H9ORF72, CUNH9ORF72, C1H9ORF72, CLG4H9ORF72 coding upstream 397127 3885861 ~ 3894614 (+)
CI01180000_03874309_03876138 LINGO2B, LINGO2 coding upstream 414917 3874211 ~ 3876824 (+)
CI01180000_04302604_04322081 NA coding downstream 6697 4301828 ~ 4324310 (+)
CI01180000_04375200_04414909 SLC4A11 coding downstream 80069 4375200 ~ 4415038 (+)
CI01180000_04417522_04418042 NA coding downstream 122391 4417522 ~ 4419271 (+)
CI01180000_04421313_04427512 RPIA coding downstream 124235 4419366 ~ 4427512 (+)
CI01180000_04430587_04465372 EIF2AK3 coding downstream 135335 4430466 ~ 4465553 (+)
G680984 NA non-coding upstream 64468 4227009 ~ 4227273 (+)
G680931 NA non-coding upstream 145324 4146138 ~ 4146417 (+)
G680929 NA non-coding upstream 147904 4143609 ~ 4143837 (+)
G680893 NA non-coding upstream 216445 4075087 ~ 4075296 (+)
G680889 NA non-coding upstream 218796 4072693 ~ 4072945 (+)
G681037 NA non-coding downstream 61519 4356650 ~ 4356861 (+)
G681038 NA non-coding downstream 96885 4392016 ~ 4392382 (+)
G681039 NA non-coding downstream 98165 4393296 ~ 4393508 (+)
G681040 NA non-coding downstream 98709 4393840 ~ 4394200 (+)
G681173 NA non-coding downstream 459389 4754520 ~ 4754758 (+)
G680736 NA other upstream 507300 3765691 ~ 3784441 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other upstream 719344 3569165 ~ 3573135 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 1596305 2689271 ~ 2693221 (+)
G679324 NA other upstream 1894381 2388867 ~ 2397360 (+)
G679076 NA other upstream 2492308 1795170 ~ 1799433 (+)
G681137 NA other downstream 488174 4783305 ~ 4785631 (+)
G681268 NA other downstream 1075279 5370410 ~ 5373762 (+)
G681592 NA other downstream 2177904 6471995 ~ 6478999 (+)
G681686 NA other downstream 2337777 6632908 ~ 6634989 (+)
G681667 NA other downstream 2360715 6655846 ~ 6659546 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005864 cfd coding NC_007124.7 CM002897.2 13681681 ~ 13684334 (+)