CI01180000_04421313_04427512 (RPIA)


Basic Information

Item Value
gene id CI01180000_04421313_04427512
gene name RPIA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 4419366 ~ 4427512 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_04421313_04427512.mRNA
ATTATAAATGAAGGCGCACAAAAAAAGAAAGACATGGTTCGATTAACTGTGGGCAAAAAAGTGAGCACCTGTGCACTTAATCATAGGCAATATGAGATTAGAGAAAGCTGAGAATCAGACTAGACATGGAGAGCTTTAAGCTTCAGAGAGAGATTAGACATACTATTGAAGAAGTTGGTTTTCTCTTAAAGATCTCGCAGCACTTGCGTAATCAGCATTCCCATTTCTCTATCTCTATGTTCCCTGTAACGGTATCATAGTTATTCTCCTTGAGTCCAGACCTCTGGTGTAAAAACAACCTCCCTTCAGTAATCCTGTTTGTCATTGGACATCTCTCAGTATTTACTGTAATATTGAAGTATTCAACTTTAATTTGTGATCACTCACACCTGGGTGGGATATGTTGACGAGTTTTGTTCTGTGCTGTTTAAATATTGTTTTGGATTTTTTTTATTTTCCTAATCATGAATGTATAATGTGTAGATTTTTATATAGCACATAAAAAAGATCCATTGTCAAATCGATTTTGTCAAACAGATAAGCTAAATTTGTAAACTGCAATATGTAAAAACTAAGGTAAATAAGAGACATGTTTATTGGAAGGTTTGTGTGGGTTTAATAGGGGTATGCTATACACTGAAATCTAGATCATTTCAAGCTGATTGCCAAATAAAGAGATATATTGATACCCATCTGTTTCAGCATTCCTCTGTTTACTAAGTTGGCTACAGTTCATTTTCATTAATAAATGCCAAAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAATATAGTCAAACTGATCTAATCATGGTTTTACCAGTATGTTCTTGCTAAAAATGCCGCAATATTTTAGATTAAAATAAATAAATAAATAAATAAAAATAGGCATTAACTGCCCTCTACTGGTCATGTTCAGCATTATAGAGGGATGGGGAGCCTGACTCATAAGAAGATGAACAACAACCTAAAATATAGTTAAAATATATTTTATATATGTTATCTCTCGGCTGGATGTTTTAATAAAATGCTATTTATTAAAACCAACATTCGTATGTGTTTAAAATTATAGATAGATTGATTGATTCATTCTATAGTTTATTAGTTTCGATAGTTTACCACAGATGGCAATGTTGAAAAGCTTCGAGTAATGAACACAGTTTCAATACATTTTGTATCTAACGCCTCGTTGCTTCAGAAAGCTTAATTTTGCCACCAATAGTTGTATGTTTCTTCGTTTAATTTCTGATATTTCTGCTATTCATTTGTTAAAGTAGCTACTTCTCGCCTTATCGGTCAAGTCCTCAGTGAGTTCCCTTATTACGAATCGTCCGAAAGAGGCGGTTCTCGGTTCAACGAGTCATTTTGATTGATTTGTTGATCGATTCTTTTTTATTGAATAAATAGTTAAAGGGATAGTTCACCCACAAATGAAAATTCTGTCATCATTTACTCACCCTTATGTTGTTCCAAACCTGTATGAGTTTCTTTCTTCTGCTGAACTAAAAATAATATTTTGAAGAATATTGGTAATCGGTACCCATTGACTTCCATAGTAGGAAAAAAATACTATGAAAGTCAATGGCTACCTTCAACTGTCTGGTTACCAACATTCTTCAAAATATATTCTTTTGTGTTCAGAATTTTCATTTTCAATTTTCATTTTTGGATGAACTATGCCTTTAAGAAAGGATTTGCGCAACCGATTCGTTGATCCGACTCAAAAGAACGATTCGTTCCAGATTCTACTGTATTCTGCTCTGCTATTGGTTGCAACAACACACGCCTGTTATGAAAACATTTGAACTCGTACTTATCTGACAGGTGTTATTTTGAGGGTACTTTAATATATCCCTTACTGTCCGTTCTGTTTCGGTTATGCGCGTTCACGTATACTAGTGTGGCAAGAATGTTGTTGTTGTGATCGTGGACGCGCTGTGTGATGAGGCCGCAGAGGTGGGTTGAGTTTGCAGTGATCAGTAGCAGATCTCTCCTCCTCTCTCTGCCGGGGAAAAAACACGTGTGTAACAGCAGCAAGCGGCACCACGGCACTCTCATGGCTGAAGAGGCCAAAAAACTGGCAGCTTACGCTGCTGTGGACAACCACATACAGAACAATCAGGTAGTTGGGGTGGGCAGCGGCTCAACTATCGTCTATGCTGTGGACAGGCTGGCTGAGAGGGTAAGACAGGAGAAGCTGAACATTGTGTGTGTTCCCACATCCTTCCAGGCCCGTCAGCTGATTCTGCAGCATGGCCTCCCTCTGTCTGATTTAGACAGACATCCTGAGCTGGATGTAGCAGTTGACGGAGCTGATGAAGTTGATGCTGCTTTGACACTGATTAAAGGAGGAGGAGGATGCTTAACCCAGGAGAAGATTGTGGCTGGTTGTGCCAAACACTTCATTGTCATCGCAGACTATAGAAAGGACTCAAAGGCTTTGGGGCAGCAGTGGAAGAAAGGTGTGCCGGTGGAGGTCATCCCCATGGCGTATGTGCCCGTGTCCAGAGCCATTGCCCAGCGCTTCGGAGGAGAGGCAGTGCTGAGGATGGCAGTCAGCAAAGCGGGTCCAGTGGTTACTGATAACAATAACTTCATTCTGGATTGGAAGTTTGAGCATGCTCAGAACTGGAAAGAGGTCAACACGGCCATCAAGATGATCCCA

Function

symbol description
rpia Predicted to enable ribose-5-phosphate isomerase activity. Predicted to be involved in D-ribose metabolic process and pentose-phosphate shunt, non-oxidative branch. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in immature eye; liver; midbrain; retina; and yolk syncytial layer. Orthologous to human RPIA (ribose 5-phosphate isomerase A).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K01807 rpiA; ribose 5-phosphate isomerase A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_04421313_04427512.mRNA True 2671 mRNA 0.39 8 4419366 4427512

Neighbor

gene id symbol gene type direction distance location
CI01180000_04417522_04418042 NA coding upstream 95 4417522 ~ 4419271 (+)
CI01180000_04375200_04414909 SLC4A11 coding upstream 4328 4375200 ~ 4415038 (+)
CI01180000_04302604_04322081 NA coding upstream 97051 4301828 ~ 4324310 (+)
CI01180000_04292374_04295052 CFD coding upstream 124235 4291741 ~ 4295131 (+)
CI01180000_04249587_04251719 FOXI2 coding upstream 166915 4249452 ~ 4252451 (+)
CI01180000_04430587_04465372 EIF2AK3 coding downstream 2954 4430466 ~ 4465553 (+)
CI01180000_04469563_04545081 ATRN coding downstream 42051 4469563 ~ 4545081 (+)
CI01180000_04822480_04823397 NOTO coding downstream 394851 4822363 ~ 4823566 (+)
CI01180000_04851137_04855438 EMX1.2, EMX1 coding downstream 423625 4851137 ~ 4855584 (+)
CI01180000_04920320_04921486 NA coding downstream 492144 4919656 ~ 4921756 (+)
G681040 NA non-coding upstream 25166 4393840 ~ 4394200 (+)
G681039 NA non-coding upstream 25858 4393296 ~ 4393508 (+)
G681038 NA non-coding upstream 26984 4392016 ~ 4392382 (+)
G681037 NA non-coding upstream 62505 4356650 ~ 4356861 (+)
G681173 NA non-coding downstream 327008 4754520 ~ 4754758 (+)
G681174 NA non-coding downstream 330165 4757677 ~ 4758241 (+)
G681179 NA non-coding downstream 344779 4772291 ~ 4772496 (+)
G681183 NA non-coding downstream 347087 4774599 ~ 4774811 (+)
G681137 NA non-coding downstream 355793 4783305 ~ 4785631 (+)
G680736 NA other upstream 634925 3765691 ~ 3784441 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other upstream 846969 3569165 ~ 3573135 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 1723930 2689271 ~ 2693221 (+)
G679324 NA other upstream 2022006 2388867 ~ 2397360 (+)
G679076 NA other upstream 2619933 1795170 ~ 1799433 (+)
G681268 NA other downstream 942898 5370410 ~ 5373762 (+)
G681592 NA other downstream 2045523 6471995 ~ 6478999 (+)
G681686 NA other downstream 2205396 6632908 ~ 6634989 (+)
G681667 NA other downstream 2228334 6655846 ~ 6659546 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005869 rpia coding NC_007124.7 CM002897.2 13930263 ~ 13944288 (+)