RNA id: TU112509


Basic Information

Item Value
RNA id TU112509
length 280
lncRNA type intronic
GC content 0.58
exon number 1
gene id G90226
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2836519 ~ 2836798 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggcaggtcgttccaccatttaggggccaaggatgagaaggagcggctctggaggaaggagagtggagaggaggcagagttagtcttctggcactggaggagcgcagtggtctggaggggatgtatggagagatgagtgtctgaaggtagcttggtgcagtgtggtcgagacagcgataggtgagggtcaaagtcttgaactgaagccgtgccgctatcgggagccagtggagggagcggagcagtggagtagcgtgtgaatcagggcagagagacaccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112506 lncRNA downstream 108169 2725184 ~ 2728350 (-) True AMCG00017426
TU112503 lncRNA downstream 114221 2721426 ~ 2722298 (-) True G90221
TU112428 lncRNA downstream 372260 2373110 ~ 2464259 (-) True G90157
TU112399 lncRNA downstream 550990 2285225 ~ 2285529 (-) True G90139
TU112389 lncRNA downstream 650780 2185385 ~ 2185739 (-) True G90129
TU112527 lncRNA upstream 102452 2939250 ~ 2939477 (-) True G90243
TU112528 lncRNA upstream 103137 2939935 ~ 2940143 (-) True G90244
TU112536 lncRNA upstream 518267 3355065 ~ 3355489 (-) True G90252
TU112539 lncRNA upstream 567688 3404486 ~ 3404766 (-) True G90255
TU112567 lncRNA upstream 835497 3672295 ~ 3685214 (-) True G90281
AMCG00017418 mRNA downstream 220957 2601783 ~ 2615562 (-) True AMCG00017418
AMCG00017417 mRNA downstream 270242 2528915 ~ 2566277 (-) True AMCG00017417
AMCG00017414 mRNA downstream 409392 2076178 ~ 2427127 (-) True AMCG00017414
AMCG00017406 mRNA downstream 804303 2023432 ~ 2032216 (-) True AMCG00017406
AMCG00017408 mRNA downstream 820957 2005759 ~ 2015562 (-) True AMCG00017408
AMCG00017425 mRNA upstream 5124 2841922 ~ 3087650 (-) True AMCG00017425
AMCG00017430 mRNA upstream 592823 3429621 ~ 3487525 (-) True AMCG00017430
AMCG00017431 mRNA upstream 692885 3529683 ~ 3539396 (-) True AMCG00017431
AMCG00017434 mRNA upstream 901015 3737813 ~ 3747843 (-) True AMCG00017434
AMCG00017432 mRNA upstream 939696 3776494 ~ 3799472 (-) True AMCG00017432
TU112472 other downstream 220995 2608689 ~ 2615524 (-) False AMCG00017418
TU112073 other downstream 2484733 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 2730634 105685 ~ 105885 (-) True G89804
TU112697 other upstream 1705977 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 2321586 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 2321586 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 2385675 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 3550454 6387252 ~ 6389038 (-) True G90715

Expression Profile